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AgeCommit message (Expand)Author
2021-06-05biology/hyphy: Update to 2.5.31Joseph Mingrone
2021-06-05biology/jalview: Broken on 11Yuri Victorovich
2021-05-29biology/seqan3: Update 3.0.2-1195 -> 3.0.3Yuri Victorovich
2021-05-29biology/minimap2: Update to 2.20Jason W. Bacon
2021-05-26biology/taxonkit: New port: Practical and efficient NCBI taxonomy toolkitYuri Victorovich
2021-05-26biology/unikmer: New port: Toolkit for nucleic acid k-mer analysis, set opera...Yuri Victorovich
2021-05-24biology/bowtie2: Update to 2.4.4Jason W. Bacon
2021-05-24biology/py-resdk: Update 13.2.0 -> 13.3.0Yuri Victorovich
2021-05-19biology/seqkit: Update 0.16.0 -> 0.16.1Yuri Victorovich
2021-05-19biology/iolib: Drop maintainershipDanilo Egea Gondolfo
2021-05-18- Update Unipro UGENE to version 38.1 and thus unbreakAlexey Dokuchaev
2021-05-17biology/bowtie2: Update to 2.4.3Jason W. Bacon
2021-05-15biology/ucsc-userapps: Update to v414Jason W. Bacon
2021-05-15*: Remove unnecessary 'port' argument from USES=readlineYasuhiro Kimura
2021-05-12biology/cytoscape: mark unconditionally BROKENDmitry Marakasov
2021-05-12biology/ugene: mark BROKEN (does not fetch)Dmitry Marakasov
2021-05-11biology/seqan3: Correct dependenciesYuri Victorovich
2021-05-11biology/seqan3: Add dependency math/lemonYuri Victorovich
2021-05-11New port: biology/seqan3: C++ header-only library for biological sequence ana...Yuri Victorovich
2021-05-12biology/libsbml: Rename LIBXML option to LIBXML2Po-Chuan Hsieh
2021-05-10math/py-matplotlib: chase minimum Python version in dependent portsThierry Thomas
2021-05-09biology/mothur: Update 1.45.2 -> 1.45.3Yuri Victorovich
2021-05-06Deorbit RESTRICTED && NO_CDROM, part two.Mathieu Arnold
2021-05-06Deorbit RESTRICTED && NO_CDROM, part one.Mathieu Arnold
2021-05-05biology/py-resdk: Update 13.1.0 -> 13.2.0Yuri Victorovich
2021-05-04biology/py-cutadapt: Update strict py-dnaio dep versionJason W. Bacon
2021-05-04biology/py-dnaio: Update to 0.5.1Jason W. Bacon
2021-05-01Clean up some thingsTobias Kortkamp
2021-04-27biology/py-orange3-bioinformatics: Update 3.2.2 -> 4.3.1Yuri Victorovich
2021-04-26biology/ncbi-entrez-direct: Update to 14.9.20210423_1Jason W. Bacon
2021-04-26devel/libepoll-shim: update to 0.0.20210418Jan Beich
2021-04-25biology/jalview: Update 2.07 -> 2.11.1.4Yuri Victorovich
2021-04-25Hook biology/ucsc-userapps to the buildAntoine Brodin
2021-04-25biology/ucsc-userapps: Command line tools from the UCSC Genome Browser projectJason W. Bacon
2021-04-24biology/ncbi-entrez-direct: Access to the NCBI's interconnected databasesJason W. Bacon
2021-04-23biology/viennarna: Update 2.4.17 -> 2.4.18Yuri Victorovich
2021-04-23biology/py-pyfaid: Update 0.5.9.2 -> 0.5.9.5Yuri Victorovich
2021-04-22biology/abyss: Update 2.3.0-3 -> 2.3.1Yuri Victorovich
2021-04-21biology/py-crossmap: Update to 0.5.4Jason W. Bacon
2021-04-21biology/py-crossmap: Fix build with Python 3.8+Kai Knoblich
2021-04-21biology/py-bigwig: Fix packaging with Python 3.8+Kai Knoblich
2021-04-19New port: biology/py-resdk: Resolwe SDK to interact with Resolwe server and R...Yuri Victorovich
2021-04-19biology/snpeff: Improvements to Makefile and patchesJason W. Bacon
2021-04-18biology/abyss: Update 2.2.5 -> 2.3.0-3Yuri Victorovich
2021-04-18biology/snpeff: Genetic variant annotation and effect prediction toolboxJason W. Bacon
2021-04-18biology/bbmap: BBMap short read aligner, and other bioinformatic toolsJason W. Bacon
2021-04-18biology/bowtie2: Add support for powerpc64leJason W. Bacon
2021-04-18biology/readseq: Remove $FreeBSD$ tag inserted to silence portlintJason W. Bacon
2021-04-18biology/readseq: Read and reformat biosequences, Java command-line versionJason W. Bacon
2021-04-16biology/seqkit: Change WWW to the project URL (from GitHub URL)Yuri Victorovich
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