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PORTNAME= scikit-bio
PORTVERSION= 0.5.6
CATEGORIES= biology education python
MASTER_SITES= CHEESESHOP
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
MAINTAINER= yuri@FreeBSD.org
COMMENT= Data structures, algorithms, educational resources for bioinformatics
LICENSE= BSD3CLAUSE
LICENSE_FILE= ${WRKSRC}/COPYING.txt
BUILD_DEPENDS= ${PYNUMPY}
RUN_DEPENDS= ${PYNUMPY} \
${PYTHON_PKGNAMEPREFIX}CacheControl>=0.11.5:www/py-cachecontrol@${PY_FLAVOR} \
${PYTHON_PKGNAMEPREFIX}decorator>=3.4.2:devel/py-decorator@${PY_FLAVOR} \
${PYTHON_PKGNAMEPREFIX}hdmedians>=0.13:math/py-hdmedians@${PY_FLAVOR} \
${PYTHON_PKGNAMEPREFIX}ipython>=3.2.0:devel/ipython@${PY_FLAVOR} \
${PYTHON_PKGNAMEPREFIX}lockfile>=0.10.2:devel/py-lockfile@${PY_FLAVOR} \
${PYTHON_PKGNAMEPREFIX}matplotlib>=1.4.3:math/py-matplotlib@${PY_FLAVOR} \
${PYTHON_PKGNAMEPREFIX}natsort>=4.0.3:devel/py-natsort@${PY_FLAVOR} \
${PYTHON_PKGNAMEPREFIX}pandas>=1.0.0:math/py-pandas@${PY_FLAVOR} \
${PYTHON_PKGNAMEPREFIX}scikit-learn>=0.19.1:science/py-scikit-learn@${PY_FLAVOR} \
${PYTHON_PKGNAMEPREFIX}scipy>0:science/py-scipy@${PY_FLAVOR}
USES= python:3.7+
USE_PYTHON= autoplist distutils
.include <bsd.port.options.mk>
.if ${ARCH} == i386
CFLAGS+= -msse2 # workaround for https://github.com/biocore/scikit-bio/issues/1727
CXXFLAGS+= -msse2
.elif ${ARCH:Mpowerpc64*}
CFLAGS+= -DNO_WARN_X86_INTRINSICS
USE_GCC= yes
.endif
.include <bsd.port.mk>
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