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PORTNAME= transdecoder
DISTVERSIONPREFIX= TransDecoder-v
DISTVERSION= 5.4.0
PORTREVISION= 2
CATEGORIES= biology perl5
PKGNAMEPREFIX= p5-
MAINTAINER= jwb@FreeBSD.org
COMMENT= Identify candidate coding regions within transcript sequences
LICENSE= BSD3CLAUSE
RUN_DEPENDS= cd-hit>=4.6.1:biology/cd-hit \
p5-URI>0:net/p5-URI
USES= perl5 shebangfix
USE_GITHUB= yes
GH_PROJECT= TransDecoder
SHEBANG_FILES= sample_data/cufflinks_example/runMe.sh \
sample_data/pasa_example/runMe.sh \
sample_data/simple_transcriptome_target/runMe.sh \
util/pfam_mpi.pbs
NO_BUILD= yes
NO_ARCH= yes
PERL_MOD_DIR= ${PREFIX}/${SITE_PERL_REL}/${PORTNAME}
PERL_UTIL_DIR= ${PREFIX}/libexec/${PORTNAME}
SCRIPTS= ${WRKSRC}/TransDecoder.LongOrfs \
${WRKSRC}/TransDecoder.Predict
post-patch:
@${REINPLACE_CMD} \
-e 's|$$FindBin::RealBin/PerlLib|${PERL_MOD_DIR}|g' \
-e 's|$$FindBin::Bin/../PerlLib|${PERL_MOD_DIR}|g' \
-e 's|$$FindBin::RealBin/util|${PERL_UTIL_DIR}|g' \
${SCRIPTS} \
${WRKSRC}/util/*.pl
do-install:
@${MKDIR} ${STAGEDIR}${PERL_MOD_DIR} ${STAGEDIR}${PERL_UTIL_DIR}
${INSTALL_SCRIPT} ${WRKSRC}/PerlLib/* ${STAGEDIR}${PERL_MOD_DIR}
${INSTALL_SCRIPT} ${SCRIPTS} ${STAGEDIR}${PREFIX}/bin
${INSTALL_SCRIPT} ${WRKSRC}/util/*.pl ${STAGEDIR}${PERL_UTIL_DIR}
.include <bsd.port.mk>
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