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PORTNAME= ngs
DISTVERSION= 2.11.0
CATEGORIES= biology
PKGNAMESUFFIX= -sdk
MAINTAINER= yuri@FreeBSD.org
COMMENT= Tools and libraries for using data in the INSDC Sequence Read Archives
LICENSE= PD
LICENSE_FILE= ${WRKSRC}/LICENSE
BROKEN_aarch64= fails to configure: unsupported architecture 'FreeBSD'
BROKEN_riscv64= fails to configure: unsupported architecture 'FreeBSD'
NOT_FOR_ARCHS= powerpc64
NOT_FOR_ARCHS_REASON= os-arch.prl needs to be taught about powerpc64
USES= gmake perl5
GNU_CONFIGURE= yes
USE_GITHUB= yes
GH_ACCOUNT= ncbi
ALL_TARGET= default
USE_LDCONFIG= yes
CFLAGS+= -I${WRKSRC}/ngs-sdk/ngs/unix/${ARCH}/
post-patch:
@cd ${WRKSRC}/ngs-sdk/ngs/unix && ${LN} -s x86_64 amd64
do-install:
cd ${WRKSRC}/ngs-sdk && ${COPYTREE_SHARE} ngs ${STAGEDIR}/${PREFIX}/include
${INSTALL_PROGRAM} ${WRKSRC}/ngs-sdk/${ARCH}-portbld-*/ngs-sdk/FreeBSD/clang/${ARCH}/rel/lib/libngs-sdk.so.${DISTVERSION} ${STAGEDIR}${PREFIX}/lib/
cd ${STAGEDIR}${PREFIX}/lib/ && \
${LN} -s libngs-sdk.so.${DISTVERSION} libngs-sdk.so.${DISTVERSION:R:R} && \
${LN} -s libngs-sdk.so.${DISTVERSION:R:R} libngs-sdk.so
.for l in libngs-c++.a libngs-adapt-c++.a
${INSTALL_LIB} ${WRKSRC}/ngs-sdk/${ARCH}-portbld-*/ngs-sdk/FreeBSD/clang/${ARCH}/rel/lib/${l}.${PORTVERSION} ${STAGEDIR}${PREFIX}/lib/${l}
.endfor
.include <bsd.port.mk>
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