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PORTNAME= ncbi-cxx-toolkit
DISTVERSION= 22_0_0
CATEGORIES= biology science devel
MASTER_SITES= ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools++/2019/Mar_28_2019/
DISTNAME= ncbi_cxx--${DISTVERSION}
MAINTAINER= yuri@FreeBSD.org
COMMENT= NCBI C++ Toolkit
LICENSE= PD
LICENSE_FILE= ${WRKSRC}/doc/public/LICENSE
LIB_DEPENDS= liblmdb.so:databases/lmdb \
libpcre.so:devel/pcre
RUN_DEPENDS= bash:shells/bash
USES= compiler:c++11-lang gmake mysql perl5 python shebangfix ssl xorg
SHEBANG_FILES= src/app/blast/get_species_taxids.sh src/app/blast/legacy_blast.pl src/app/blast/update_blastdb.pl src/app/winmasker/windowmasker_2.2.22_adapter.py
USE_XORG= x11 xpm
GNU_CONFIGURE= yes
CONFIGURE_ARGS= --without-debug --with-dll --without-static
post-install:
# strip
@${FIND} ${STAGEDIR}${PREFIX}/bin -type f | ${GREP} -v -E '\.(sh|py|pl)$$' | ${XARGS} ${STRIP_CMD}
@${FIND} ${STAGEDIR}${PREFIX}/lib -name "*.so" | ${XARGS} ${STRIP_CMD}
# remove an empty directory
@${RMDIR} ${STAGEDIR}${PREFIX}/include/ncbi-tools++/objtools/data_loaders/genbank/psg
# remove the conflicting file
@${RM} ${STAGEDIR}${PREFIX}/lib/liblmdb.so
# autoplist: thousands of files
@cd ${STAGEDIR}${PREFIX} && \
${RMDIR} include/ncbi-tools++/algo/blast/bl2api include/ncbi-tools++/objtools/test && \
${FIND} * -type f -or -type l >> ${TMPPLIST}
.include <bsd.port.mk>
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