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PORTNAME= Jellyfish
DISTVERSIONPREFIX= v
DISTVERSION= 2.2.10
PORTREVISION= 9
CATEGORIES= biology
MAINTAINER= jwb@FreeBSD.org
COMMENT= Fast, memory-efficient counting of k-mers in DNA
LICENSE= GPLv3+
LICENSE_FILE= ${WRKSRC}/LICENSE
BUILD_DEPENDS= yaggo:devel/yaggo
LIB_DEPENDS= libhts.so:biology/htslib
USES= autoreconf compiler:c++11-lib gmake libtool pathfix pkgconfig
USE_LDCONFIG= yes
USE_GITHUB= yes
GNU_CONFIGURE= yes
GH_ACCOUNT= gmarcais
INSTALL_TARGET= install-strip
PLIST_SUB= VER=${PORTVERSION}
OPTIONS_DEFINE= NLS
OPTIONS_SUB= yes
NLS_USES= gettext
NLS_CONFIGURE_ENABLE= nls
.include <bsd.port.pre.mk>
# SSE code assumes amd64 features
.if ${ARCH} != "amd64"
CONFIGURE_ARGS+=--without-sse
.endif
.if ${CHOSEN_COMPILER_TYPE} == gcc
CXXFLAGS+= -faligned-new
.endif
.include <bsd.port.post.mk>
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