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AgeCommit message (Expand)Author
2019-01-29New port: biology/dsr-pdb: Simple C++ PDB reader (reads the protein descripti...Yuri Victorovich
2019-01-26biology/py-pysam: Update 0.15.1 -> 0.15.2Yuri Victorovich
2019-01-22Sort categories Makefiles.Mathieu Arnold
2019-01-16Fix Qt5 symbol version scripts to put the catch-all clause first. WhenTijl Coosemans
2019-01-12biology/stacks: Upgrade to 2.3Jason W. Bacon
2019-01-11New port: biology/hisat2: Program for mapping next-generation sequencing readsJason W. Bacon
2019-01-11Fixup bulk -a errors with BUILD_ALL_PYTHON_FLAVORS=yes.Mathieu Arnold
2019-01-07biology/seqtools: fix build on current, if lld is lld7Kurt Jaeger
2019-01-07biology/groopm fails to build with python3Antoine Brodin
2019-01-06Update dns/libidn2 to 2.1.0Sunpoet Po-Chuan Hsieh
2019-01-05Update science/hdf5 to 1.10.4Sunpoet Po-Chuan Hsieh
2019-01-01biology/ncbi-blast+: Upgrade to 2.8.1Jason W. Bacon
2018-12-31biology/diamond: Update to version 0.9.24Joseph Mingrone
2018-12-27biology/iqtree: switch to outsource cmake buildJoseph Mingrone
2018-12-26Update math/eigen3 to 3.3.7Tobias C. Berner
2018-12-25Change cmake default behaviour to outsource.Tobias C. Berner
2018-12-23biology/iqtree: Update to version 1.6.9Joseph Mingrone
2018-12-22- Update to 1.73Wen Heping
2018-12-21Remove expired ports:Rene Ladan
2018-12-19biology/gff2ps: update 0.98d to 0.98lVinícius Zavam
2018-12-17biology/diamond: Update to 0.9.23 plus fixes after releaseJoseph Mingrone
2018-12-16Update Qt5 to 5.12.0Tobias C. Berner
2018-12-15New port: biology/py-fastTSNE: Fast, parallel implementations of t-SNEYuri Victorovich
2018-12-12Bump PORTREVISION for ports depending on the canonical version of GCCGerald Pfeifer
2018-12-12devel/boost-*: update to 1.69.0Jan Beich
2018-12-11Remove biology/njplotJoseph Mingrone
2018-12-11biology/mummer: Add USES=compiler:c++11-langYuri Victorovich
2018-12-11biology/mummer: Update 3.23 -> 4.0.0beta2-2Yuri Victorovich
2018-12-11biology/mummer: Take maintainershipYuri Victorovich
2018-12-07New port: math/checkm: Quality assessment tool for the microbial genomesYuri Victorovich
2018-12-07New port: math/groopm: Metagenomic binning suiteYuri Victorovich
2018-12-04devel/gradle: Update to 5.0Yuri Victorovich
2018-12-03biology/gatk: Change gradle4->gradle because it builds fine with both gradle ...Yuri Victorovich
2018-12-03biology/gatk: Correct the targetYuri Victorovich
2018-12-03New port: biology/gatk: Variant discovery in high-throughput sequencing dataYuri Victorovich
2018-12-02Mark QT4 ports/functionality for removal on 2019-03-15Rene Ladan
2018-11-18biology/igv: Update 2.4.15 -> 2.4.16Yuri Victorovich
2018-11-13biology/molden: update to 5.8.2Johannes M Dieterich
2018-11-09biology/seqan-apps: fix build with GCC-based architecturesSteve Wills
2018-11-07biology/molden: Unbreak: fix the problem that it can't find libgcc_s.so from gccYuri Victorovich
2018-11-05Fix build failure with base GCC because of double typedefs.Mark Linimon
2018-11-05Remove the incorrect typedefs to fix build on tier-2.Mark Linimon
2018-11-05Remove the inccorrect typedefs to fix build on tier-2.Mark Linimon
2018-11-04biology/igv: Update 2.4.10 -> 2.4.15Yuri Victorovich
2018-11-04biology/canu: Upgrade to 1.8, add experimental SLURM integrationJason W. Bacon
2018-11-03biology/bowtie: Patch for gcc8 and clean upJason W. Bacon
2018-11-03biology/bowtie: Revert previous commit with missing log messageJason W. Bacon
2018-11-03biology/bowtie: PatchJason W. Bacon
2018-10-30biology/py-loompy: Update 2.0.15 -> 2.0.16Yuri Victorovich
2018-10-28biology/iqtree: Update to version 1.6.8Joseph Mingrone
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