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AgeCommit message (Expand)Author
2019-06-28biology/mothur: Update 1.42.2 -> 1.42.3Yuri Victorovich
2019-06-25Mark this port as not buildable on powerpc64:Mark Linimon
2019-06-24biology/iqtree: Update to version 1.6.11Joseph Mingrone
2019-06-24biology/viennarna: Make it less/not prone to failures due to hardcoded C++ li...Yuri Victorovich
2019-06-24New port: biology/viennarna: Alignment tools for the structural analysis of RNAYuri Victorovich
2019-06-22Use USES=pathfixSunpoet Po-Chuan Hsieh
2019-06-21biology/abyss: fix build on big-endian architecturesPiotr Kubaj
2019-06-21Enable workaround for building on powerpc64.Mark Linimon
2019-06-19biology/mothur: Update 1.42.1-3 -> 1.42.2Yuri Victorovich
2019-06-19biology/py-bx-python: Update 0.8.2 -> 0.8.4Yuri Victorovich
2019-06-15New port: biology/treekin: Efficient computation of RNA folding dynamicsYuri Victorovich
2019-06-14biology/ncbi-blast+: Fix build on powerpc64, add run dep for update_blastdb.plJason W. Bacon
2019-06-12biology/ncbi-blast+: Upgrade to 2.9.0Jason W. Bacon
2019-06-12biology/kallisto: Upgrade to 0.46.0Jason W. Bacon
2019-06-08biology/tRNAscan-SE: Update to 2.0.3Steve Wills
2019-06-01biology/igv: Update 2.5.2 -> 2.5.3Yuri Victorovich
2019-05-30biology/tRNAscan-SE: fix build with GCC-based architectursPiotr Kubaj
2019-05-29biology/cufflinks: Fix build on i386 by removing the hard-coded -m64Yuri Victorovich
2019-05-26biology/bolt-lmm: Mixed model association testing and variance component anal...Jason W. Bacon
2019-05-25New port: biology/cufflinks: Cufflinks assembles transcripts, estimates their...Yuri Victorovich
2019-05-22biology/hhsuite: Fix build on platforms where SIMD instruction set doesn't ex...Yuri Victorovich
2019-05-20biology/fastp: Remove redundant USE_GCCJason W. Bacon
2019-05-20biology/mothur: Add USES=compiler:c++11-langYuri Victorovich
2019-05-20New port: biology/mothur: Software for bioinformatics of the microbial ecolog...Yuri Victorovich
2019-05-20- Update to 3.3.20190321Wen Heping
2019-05-20- Update to 5.18.0Wen Heping
2019-05-19New port: biology/hhsuite: Remote protein homology detection suiteYuri Victorovich
2019-05-18biology/gemma: Lowercase PORTNAME, remove unnecesary USE_GCCJason W. Bacon
2019-05-17biology/gemma: Genome-wide Efficient Mixed Model AssociationJason W. Bacon
2019-05-13biology/jellyfish: Upgrade to 2.2.10, patch for powerpc64Jason W. Bacon
2019-05-11biology/vsearch: Update to 2.13.4Jason W. Bacon
2019-05-11biology/igv: Update 2.5.0 -> 2.5.2Yuri Victorovich
2019-05-11biology/trimadap: Mark only for amd64 and i386Jason W. Bacon
2019-05-10biology/stacks: Remove obsolete pkg-message regarding web interfaceJason W. Bacon
2019-05-10biology/stacks: Upgrade to 2.4Jason W. Bacon
2019-05-09biology/vsearch: Remove powerpc64 supportJason W. Bacon
2019-05-09biology/vsearch: Versatile open-source tool for metagenomicsJason W. Bacon
2019-05-08devel/openmp: phase outJan Beich
2019-05-07biology/tRNAscan-SE: fix build with GCC-based architecturesPiotr Kubaj
2019-05-05biology/minimap2: Upgrade to 2.17Jason W. Bacon
2019-05-04biology/ddocent: Upgrade to 2.7.8Jason W. Bacon
2019-05-04biology/fastp: Respect WITH_DEBUG - do not strip binaryJason W. Bacon
2019-05-03These ports now build on aarch64.Mark Linimon
2019-05-03biology/fastp: Ultra-fast all-in-one FASTQ preprocessorJason W. Bacon
2019-05-02biology/star: Force newer GCC on platforms with GCC 4.2 baseJason W. Bacon
2019-04-27biology/py-cutadapt: Upgrade to 2.3Jason W. Bacon
2019-04-25Clean up plistAntoine Brodin
2019-04-24biology/minimap2: Pairwise aligner for genomic and spliced nucleotide sequencesJason W. Bacon
2019-04-24biology/bowtie2: Clarify CPU-specificityJason W. Bacon
2019-04-23biology/star: Modify PKGBASE to avoid conflict with archivers/starJason W. Bacon
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