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AgeCommit message (Expand)Author
2020-09-27Update PYTHON option to use Python 3Sunpoet Po-Chuan Hsieh
2020-09-27Allow building on powerpc64le.Mark Linimon
2020-09-27Canonicalize powerpc64le CXXFLAGS to be the same as powerpc64.Mark Linimon
2020-09-27biology/abyss: Update 2.2.4 -> 2.2.5Yuri Victorovich
2020-09-27biology/ncbi-cxx-toolkit: Fix build on 13Yuri Victorovich
2020-09-26biology/py-biom-format: Fix fetch and relax scipy requirementJoseph Mingrone
2020-09-25biology/ncbi-cxx-toolkit: Update 21.0.0 -> 22.0.0Yuri Victorovich
2020-09-25biology/py-biom-format: Update to version 2.1.8Joseph Mingrone
2020-09-24biology/py-scikit-bio: Fix build on the i386 architectureYuri Victorovich
2020-09-24Also enable on powerpc64le.Mark Linimon
2020-09-24Also enable on powerpc64le.Mark Linimon
2020-09-24biology/py-biom-format: Restore in preparation for an update to v2.1.8Joseph Mingrone
2020-09-22biology/gmap: Upgrade to 2020.09.12Jason W. Bacon
2020-09-21Fix build with -fno-commonStefan Eßer
2020-09-19Unbreak bulk -aAntoine Brodin
2020-09-19Remove expired ports:Rene Ladan
2020-09-18biology/subread: Add -fcommon for clang 11Jason W. Bacon
2020-09-14biology/canu: Upgrade to 2.1Jason W. Bacon
2020-09-13biology/py-pyfaidx: Update 0.5.5.2 -> 0.5.9.1Yuri Victorovich
2020-09-08biology/gatk: Fix buildYuri Victorovich
2020-09-07biology/viennarna: Update 2.4.14 -> 2.4.15Yuri Victorovich
2020-09-06biology/gatk: Update 4.1.8.0 -> 4.1.8.1Yuri Victorovich
2020-09-04biology/mapm3: Reformat patches.Fernando Apesteguía
2020-09-04biology/mapm3: Fix build with llvm11, gcc10Fernando Apesteguía
2020-09-02biology/hyphy: Update to version 2.5.18 and add AVX optionJoseph Mingrone
2020-09-02biology/py-ete3: Update 3.1.1 -> 3.1.2Yuri Victorovich
2020-08-30biology/diamond: Update to version 2.0.4Joseph Mingrone
2020-08-30biology/picard-tools: Remove extraneous fileJason W. Bacon
2020-08-30Extend expiration of ports broken with -fno-commonNiclas Zeising
2020-08-30Chase security/p11-kit updateRoman Bogorodskiy
2020-08-29biology/: Fix build with clang11 and deprecate ports@ portsTobias C. Berner
2020-08-29biology/phyml: fix build on recent currentTobias C. Berner
2020-08-28biology/cufflinks: fix build on recent currentTobias C. Berner
2020-08-28biology/bwa: fix build on recent currentTobias C. Berner
2020-08-27Remove expired ports:Rene Ladan
2020-08-27biology/hhsuite: Update 3.2.0 -> 3.3.0Yuri Victorovich
2020-08-20biology/paml: fix the build with LLVM 11Kyle Evans
2020-08-20biology/hyphy: Update to version 2.5.17Joseph Mingrone
2020-08-15devel/ipython: Update to 7.17.0Danilo G. Baio
2020-08-15Remove deprecated ports:Rene Ladan
2020-08-14biology/graphlan: Remove the 2.7 limitation on python because it's no longer ...Yuri Victorovich
2020-08-13biology/groopm: Remove python's 2.7 restriction placed here by mistakeYuri Victorovich
2020-08-07biology/diamond: Update to version 2.0.2Joseph Mingrone
2020-08-07biology/py-gtfparse: Update 1.2.0 -> 1.2.1Yuri Victorovich
2020-08-03biology/samtools: Upgrade to 1.10Jason W. Bacon
2020-08-03biology/bcftools: Upgrade to 1.10.2Jason W. Bacon
2020-08-03biology/vt: Patch to work with htslib 1.10.2Jason W. Bacon
2020-08-03biology/htslib: Upgrade to 1.10.2Jason W. Bacon
2020-08-03biology/kallisto: Revert to 0.46.1Jason W. Bacon
2020-07-28biology/diamond: Update to version 2.0.0Joseph Mingrone
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