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AgeCommit message (Expand)Author
2020-02-09biology/py-macs2: Bump revision for previous run dep additionJason W. Bacon
2020-02-09biology/py-macs2: Add missing numpy run dependJason W. Bacon
2020-02-09biology/gatk: Change from gradle5 to gradle6Yuri Victorovich
2020-02-08Clean up MakefileSunpoet Po-Chuan Hsieh
2020-02-05biology/seaview: Update version 4.7=>5.0Muhammad Moinur Rahman
2020-02-03biology/diamond: Update to version 0.9.30Joseph Mingrone
2020-01-30Fix math/openblas and bump dependent portsSteve Wills
2020-01-29biology/hmmer: update to 3.3Fernando Apesteguía
2020-01-27biology/infernal: update to 1.1.3Fernando Apesteguía
2020-01-27Remove expired ports:Rene Ladan
2020-01-23biology/py-pysam: Update 0.15.3 -> 0.15.4Yuri Victorovich
2020-01-21math/openblas: Update to 0.3.7Steve Wills
2020-01-20biology/gatk: Update 4.1.3.0 -> 4.1.4.1Yuri Victorovich
2020-01-19- Update WWWDmitry Marakasov
2020-01-18biology/abyss: Broken on i386Yuri Victorovich
2020-01-17biology/muscle: unbreak in -CURRENTFernando Apesteguía
2020-01-17biology/ngs-sdk: Update 2.10.1 -> 2.10.2Yuri Victorovich
2020-01-14biology/gemma: Unbreak buildJason W. Bacon
2020-01-13devel/jsoncpp: Update 1.8.1 -> 1.9.2Yuri Victorovich
2020-01-13biology/muscle: update to 3.8.1551Fernando Apesteguía
2020-01-13biology/tRNAscan-SE: update to 2.0.5Fernando Apesteguía
2020-01-13biology/abyss: Update 2.1.5 -> 2.2.3Yuri Victorovich
2020-01-12biology/ngs-sdk: Update 2.10.0 -> 2.10.1Yuri Victorovich
2020-01-11biology/py-macs2: Upgrade to 2.2.6Jason W. Bacon
2020-01-08Remove outdated CONFLICTS: p5-bioperl-run was renamed to p5-BioPerl-Run over ...Sunpoet Po-Chuan Hsieh
2020-01-08Update to 1.7.5Sunpoet Po-Chuan Hsieh
2020-01-08Update *_DEPENDSSunpoet Po-Chuan Hsieh
2020-01-06biology/viennarna: Update 2.4.13 -> 2.4.14Yuri Victorovich
2020-01-05biology/gatk: Update 4.1.2.0-43 -> 4.1.3.0Yuri Victorovich
2020-01-05Mark a few ports broken (unfetchable)Antoine Brodin
2019-12-31biology/py-gffutils: Update 0.9 -> 0.10Yuri Victorovich
2019-12-26Update devel/tbb to 2020.0 and bump dependent ports' revisions [1]Ganael LAPLANCHE
2019-12-26biology/ncbi-blast+: Upgrade to 2.10.0Jason W. Bacon
2019-12-26Deprecate a few portsAntoine Brodin
2019-12-19biology/bedtools: Upgrade to 2.29.2Jason W. Bacon
2019-12-11devel/boost-*: update to 1.72.0Jan Beich
2019-12-11biology/bedtools: Upgrade to 2.29.1Jason W. Bacon
2019-12-08Update to 1.007007 (1.7.7)Sunpoet Po-Chuan Hsieh
2019-12-08Update *_DEPENDSSunpoet Po-Chuan Hsieh
2019-12-08Install Bio::SeqIO::entrezgeneSunpoet Po-Chuan Hsieh
2019-12-08Add p5-Bio-Variation 1.7.4Sunpoet Po-Chuan Hsieh
2019-12-08Add p5-Bio-DB-NCBIHelper 1.7.6Sunpoet Po-Chuan Hsieh
2019-12-08Add p5-Bio-DB-EMBL 1.7.4Sunpoet Po-Chuan Hsieh
2019-12-06biology/phyml: disable -march=nativePiotr Kubaj
2019-11-28biology/unanimity: Remove erroneous BROKENJason W. Bacon
2019-11-26Clean up after java/openjdk6 and java/openjdk6-jre removalJung-uk Kim
2019-11-26biology/py-multiqc: Upgrade to 1.8Jason W. Bacon
2019-11-26biology/p5-TrimGalore: Upgrade to 0.6.5Jason W. Bacon
2019-11-24biology/unanimity and dependencies: Flag as no longer open sourceJason W. Bacon
2019-11-23biology/py-cutadapt: Upgrade to 2.7Jason W. Bacon
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