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2021-04-07One more small cleanup, forgotten yesterday.Mathieu Arnold
2021-04-06all: Remove all other $FreeBSD keywords.Mathieu Arnold
2021-04-06Remove # $FreeBSD$ from Makefiles.Mathieu Arnold
2021-04-06biology/pear-merger: enable on aarch64, armv6, armv7, riscv64Piotr Kubaj
2021-04-06biology/trimadap: fix build on powerpc64lePiotr Kubaj
2021-04-06biology/pear-merger: fix build on non-x86Piotr Kubaj
2021-03-30biology/subread: Update to 2.0.2Jason W. Bacon
2021-03-29biology/molden: Fix build with gfortran10Yuri Victorovich
2021-03-28biology/igv: Update 2.8.13 -> 2.9.4Yuri Victorovich
2021-03-28biology/vcflib: fix build on powerpc64lePiotr Kubaj
2021-03-24biology/vsearch: Update to 2.16.0Jason W. Bacon
2021-03-24Mark ports recursively depending on Python 2.7 for expiration on June 23.Rene Ladan
2021-03-23biology/vcf2hap: Generate .hap file from VCF for haplohseqJason W. Bacon
2021-03-23biology/ad2vcf: Add allelic depth info from a SAM stream to a VCF fileJason W. Bacon
2021-03-23- Update Unipro UGENE to version 38.0Alexey Dokuchaev
2021-03-22Fix spelling mistakes, typos, poor wording, hyphenation, jargonisms,Alexey Dokuchaev
2021-03-21biology/vcf-split: Split a multi-sample VCF into single-sample VCFsJason W. Bacon
2021-03-21biology/biolibc: Low-level high-performance bioinformatics libraryJason W. Bacon
2021-03-20biology/htslib: Update to 1.12Jason W. Bacon
2021-03-20biology/generand: Update to 0.1.2Jason W. Bacon
2021-03-20biology/py-multiqc: Update to 1.10Jason W. Bacon
2021-03-20biology/ngs-sdk: Update 2.10.9 -> 2.11.0Yuri Victorovich
2021-03-16PyQt5: Update PyQt5 to 5.15.4 and py-qtbuilder to 1.9.1Loïc Bartoletti
2021-03-15biology/generand: Generate random genomic data in FAST[AQ], SAM, or VCF formatJason W. Bacon
2021-03-14biology/abyss: Add PORTSCOUT lineYuri Victorovich
2021-03-13Move: biology/py-fastTSNE -> math/py-openTSNEYuri Victorovich
2021-03-13biology/gatk: Fix fetchYuri Victorovich
2021-03-12biology/gatk: Update 4.1.9.0 -> 4.2.0.0Yuri Victorovich
2021-03-11biology/diamond: Update to 2.0.8Joseph Mingrone
2021-03-10biology/hmmer: disable on powerpc64le and powerpcspePiotr Kubaj
2021-03-09biology/py-scikit-bio: fix build on powerpc64Piotr Kubaj
2021-03-09biology/py-scikit-bio: fix build on powerpc64lePiotr Kubaj
2021-03-08PyQt5: Update PyQt5 to 5.15.3, QScintilla2 to 2.12.0, py-qtbuilder to 1.9.0Loïc Bartoletti
2021-03-06Unbreak INDEXAntoine Brodin
2021-03-06py-cutadapt: Update to 3.3Jason W. Bacon
2021-03-06biology/libbigwig: Update 0.4.4 -> 0.4.6Yuri Victorovich
2021-03-04biology/spoa: fix build on non-x86Piotr Kubaj
2021-03-02biology/bwa: fix build on powerpc64lePiotr Kubaj
2021-02-27biology/py-bx-python: Update 0.8.9 -> 0.8.10Yuri Victorovich
2021-02-25biology/hyphy: Update to 2.5.29Joseph Mingrone
2021-02-23biology/hyphy: Update to 2.5.28Joseph Mingrone
2021-02-19Introduce devel/onetbb and mark devel/tbb as legacyGanael LAPLANCHE
2021-02-19biology/spoa: Fix build after recent devel/cereal update; Fix LIB_DEPENDSYuri Victorovich
2021-02-17Mark BROKEN in 13/14 (via latest llvm update).Mark Linimon
2021-02-17biology/diamond: Update to 2.0.7Joseph Mingrone
2021-02-14Update a few GNUstep ports:Neel Chauhan
2021-02-05biology/py-multiqc: Update to 1.9Jason W. Bacon
2021-02-04biology/fastqc: Update to 0.11.9Jason W. Bacon
2021-02-03biology/bioparser: Update 3.0.12 -> 3.0.12-2Yuri Victorovich
2021-02-02biology/py-cutadapt: Update to 3.2Jason W. Bacon
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