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AgeCommit message (Expand)Author
2019-12-11devel/boost-*: update to 1.72.0Jan Beich
2019-12-11biology/bedtools: Upgrade to 2.29.1Jason W. Bacon
2019-12-08Update to 1.007007 (1.7.7)Sunpoet Po-Chuan Hsieh
2019-12-08Update *_DEPENDSSunpoet Po-Chuan Hsieh
2019-12-08Install Bio::SeqIO::entrezgeneSunpoet Po-Chuan Hsieh
2019-12-08Add p5-Bio-Variation 1.7.4Sunpoet Po-Chuan Hsieh
2019-12-08Add p5-Bio-DB-NCBIHelper 1.7.6Sunpoet Po-Chuan Hsieh
2019-12-08Add p5-Bio-DB-EMBL 1.7.4Sunpoet Po-Chuan Hsieh
2019-12-06biology/phyml: disable -march=nativePiotr Kubaj
2019-11-28biology/unanimity: Remove erroneous BROKENJason W. Bacon
2019-11-26Clean up after java/openjdk6 and java/openjdk6-jre removalJung-uk Kim
2019-11-26biology/py-multiqc: Upgrade to 1.8Jason W. Bacon
2019-11-26biology/p5-TrimGalore: Upgrade to 0.6.5Jason W. Bacon
2019-11-24biology/unanimity and dependencies: Flag as no longer open sourceJason W. Bacon
2019-11-23biology/py-cutadapt: Upgrade to 2.7Jason W. Bacon
2019-11-23biology/py-dnaio: Upgrade to 0.4.1Jason W. Bacon
2019-11-23biology/py-bx-python: Update 0.8.4 -> 0.8.6Yuri Victorovich
2019-11-22biology/paml: Update to version 4.9jJoseph Mingrone
2019-11-20biology/diamond: Update to v0.9.29Joseph Mingrone
2019-11-20Create devel/gradle5 in preparation of devel/gradle updateTobias Kortkamp
2019-11-17biology/haplohseq: Switch to distfile with example dataJason W. Bacon
2019-11-08biology/canu: Upgrade to 1.9Jason W. Bacon
2019-11-08- Limit python version (does not build with 3.7+)Dmitry Marakasov
2019-11-08a-b: Add missing USES={gnome,php,sdl,xorg}Tobias Kortkamp
2019-11-07Sprinkle more USES=xorgNiclas Zeising
2019-11-07biology/diamond: Update to version 0.9.28Joseph Mingrone
2019-11-06Mark a few ports BROKEN, unfetchableAntoine Brodin
2019-11-06biology/kallisto: Upgrade to 0.46.1Jason W. Bacon
2019-11-04Add USES=xorg USES=gl, ports categories bNiclas Zeising
2019-11-03biology/diamond: Update to version 0.9.27 (plus one fix)Joseph Mingrone
2019-10-25math/gsl: update to 2.6Tobias C. Berner
2019-10-23biology/avida: unbreak on powerpc64Piotr Kubaj
2019-10-16Remove expired ports:Rene Ladan
2019-10-12biology/prodigal: Eliminate a very old version from the portscout discovery p...Yuri Victorovich
2019-10-12biology/prodigal: Update 2.6.3-2 -> 2.6.3-7Yuri Victorovich
2019-10-06biology/star: Upgrade to 2.7.2dJason W. Bacon
2019-10-06biology/fastahack: Upgrade to 1.0.0Jason W. Bacon
2019-10-05biology/mothur: Update 1.42.3 -> 1.43.0Yuri Victorovich
2019-09-28biologi/ncbi-toolkit: Remove dependency on libXpNiclas Zeising
2019-09-27Deprecate x11/libXp, it is deprecated upstreamNiclas Zeising
2019-09-27biology/tophat: Fast splice junction mapper for RNA-Seq readsJason W. Bacon
2019-09-25Update devel/tbb to 2019.8 and bump dependent ports' revisionsGanael LAPLANCHE
2019-09-23biology/py-multiqc: Aggregate bioinformatics analysis reportsJason W. Bacon
2019-09-21devel/openmp: update to 9.0.0Jan Beich
2019-09-21biology/p5-TrimGalore: Upgrade to 0.6.4Jason W. Bacon
2019-09-21biology/fastqc: Upgrade to 0.11.8Jason W. Bacon
2019-09-18biology/diamond: Update to version 0.9.26Joseph Mingrone
2019-09-17Fix some misspelled or duplicated LICENSE_*Tobias Kortkamp
2019-09-16biology/haplohseq: Identify regions of allelic imbalanceJason W. Bacon
2019-09-15Deprecate a few portsAntoine Brodin
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