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AgeCommit message (Expand)Author
2020-06-12biology/diamond: Update to version 0.9.34Joseph Mingrone
2020-06-09biology/py-pysam: Update 0.15.4 -> 0.16.0Yuri Victorovich
2020-06-05Add compiler:c++0x to USES to fix build on GCC-based systems:Mark Linimon
2020-06-05biology/bioawk: BWK awk modified for biological dataJason W. Bacon
2020-06-05biology/subread: Read alignment, quantification and mutation discoveryJason W. Bacon
2020-06-04bioloty/vt: Discovers short variants from Next Generation Sequencing dataJason W. Bacon
2020-06-03biology/diamond: Update to version 0.9.33Joseph Mingrone
2020-05-30biology/hyphy: Update to version 2.5.14Joseph Mingrone
2020-05-30biology/iqtree: Update to version 2.0.6Joseph Mingrone
2020-05-30biology/abyss: Update 2.2.3 -> 2.2.4Yuri Victorovich
2020-05-30Clean up some thingsTobias Kortkamp
2020-05-29biology/py-biopython: Upgrade to 1.77Jason W. Bacon
2020-05-28biology/gatk: Update 4.1.5.0 -> 4.1.7.0Yuri Victorovich
2020-05-28biology/iqtree: Update to version 2.0.5Joseph Mingrone
2020-05-27Sanitize COMMENT per Section 5.6 of the FreeBSD Porter's Handbook (part 1).Alexey Dokuchaev
2020-05-26Mark as BROKEN on powerpc64 12. It builds on -head.Mark Linimon
2020-05-24biology/py-dnaio: Upgrade to 0.4.2Jason W. Bacon
2020-05-19biology/ugene: prepare for Qt5-5.15Tobias C. Berner
2020-05-17Mark as BROKEN on powerpc64:Mark Linimon
2020-05-16Bump PORTREVISION for security/nettle shlib changeSunpoet Po-Chuan Hsieh
2020-05-16New port: biology/py-hits: Utilities for processing high-throughput sequencin...Yuri Victorovich
2020-05-16biology/py-scikit-bio: Fix licenseYuri Victorovich
2020-05-16biology/py-scikit-bio: Remove bogus linesYuri Victorovich
2020-05-16New port: biology/py-scikit-bio: Data structures, algorithms, educational res...Yuri Victorovich
2020-05-16New port: biology/py-pandas-charm: Library for getting character matrices int...Yuri Victorovich
2020-05-16New port: biology/py-ete3: Framework for the analysis and visualization of treesYuri Victorovich
2020-05-15Add compiler:c++11-lang to USES to fix build on GCC-based systems:Mark Linimon
2020-05-15New port: biology/scrm: Coalescent simulator for biological sequencesYuri Victorovich
2020-05-11Update SphinxDanilo G. Baio
2020-05-11biology/hhsuite: fix build on powerpc64 elfv2Piotr Kubaj
2020-05-10- Resurrect and unbreak by updating to version 34.0Alexey Dokuchaev
2020-05-09Update devel/gmake to 4.3.Tijl Coosemans
2020-05-09Update to 7.6.13Mateusz Piotrowski
2020-05-06Bump 37 ports depending on math/openblas through USES=blaslapack:openblas bec...Yuri Victorovich
2020-05-06Bump 46 ports depending on math/openblas because the after the recent math/op...Yuri Victorovich
2020-05-06Preserve Gradle 6.2.2 for biology/gatkTobias Kortkamp
2020-05-05Remove expired ports:Rene Ladan
2020-05-05biology/ruby-bio: remove expired optional dependency on textproc/ruby-xmlparserRene Ladan
2020-05-04biology/plink: Whole genome association analysis toolsetJason W. Bacon
2020-05-04- update libgd to 2.3.0Dirk Meyer
2020-05-03biology/hyphy: Update to version 2.5.12Joseph Mingrone
2020-05-02biology/iqtree: Update to version 2.0.4Joseph Mingrone
2020-04-25biology/hyphy: Update to version 2.5.10Joseph Mingrone
2020-04-24biology/diamond: Update to version 0.9.32Joseph Mingrone
2020-04-21- Swap back from net/openmpi3 to net/openmpiDanilo Egea Gondolfo
2020-04-21- Swap back from net/openmpi3 to net/openmpiDanilo Egea Gondolfo
2020-04-19Update to 7.6.9Mateusz Piotrowski
2020-04-19- Update net/openmpi to 4.0.3 (openmpi 1 is deprecated)Danilo Egea Gondolfo
2020-04-18Update to 7.6.8Mateusz Piotrowski
2020-04-15- Move OpenMPI support to net/openmpi3. OpenMPI 1 and 2 were deprecated.Danilo Egea Gondolfo
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