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AgeCommit message (Expand)Author
2020-08-15devel/ipython: Update to 7.17.0Danilo G. Baio
2020-08-15Remove deprecated ports:Rene Ladan
2020-08-14biology/graphlan: Remove the 2.7 limitation on python because it's no longer ...Yuri Victorovich
2020-08-13biology/groopm: Remove python's 2.7 restriction placed here by mistakeYuri Victorovich
2020-08-07biology/diamond: Update to version 2.0.2Joseph Mingrone
2020-08-07biology/py-gtfparse: Update 1.2.0 -> 1.2.1Yuri Victorovich
2020-08-03biology/samtools: Upgrade to 1.10Jason W. Bacon
2020-08-03biology/bcftools: Upgrade to 1.10.2Jason W. Bacon
2020-08-03biology/vt: Patch to work with htslib 1.10.2Jason W. Bacon
2020-08-03biology/htslib: Upgrade to 1.10.2Jason W. Bacon
2020-08-03biology/kallisto: Revert to 0.46.1Jason W. Bacon
2020-07-28biology/diamond: Update to version 2.0.0Joseph Mingrone
2020-07-26Deprecate ports broken for more than 6 monthsAntoine Brodin
2020-07-24Update to 2.0.1Sunpoet Po-Chuan Hsieh
2020-07-24Add rubygem-bio-shell 1.0.0Sunpoet Po-Chuan Hsieh
2020-07-24Add rubygem-bio-old-biofetch-emulator 1.0.0Sunpoet Po-Chuan Hsieh
2020-07-24Add rubygem-bio-executables 1.0.0Sunpoet Po-Chuan Hsieh
2020-07-17Update devel/tbb to 2020.3 and bump dependent ports' revisionsGanael LAPLANCHE
2020-07-14Unbreak bulk -aAntoine Brodin
2020-07-10biology/phyml: update to 3.3.20200621Fernando Apesteguía
2020-07-09biology/gatk: Update 4.1.7.0 -> 4.1.8.0Yuri Victorovich
2020-07-08biology/cufflinks: fix build on GCC architecturesPiotr Kubaj
2020-07-04Chanse update of devel/libffiNiclas Zeising
2020-07-04biology/psi88: Unbreak build with GCC 10Tobias Kortkamp
2020-07-04biology/bowtie: Unbreak build with GCC 10Tobias Kortkamp
2020-07-03biology/diamond: Update to version 0.9.36Joseph Mingrone
2020-06-30Bump devel/jsoncpp consumers after r540853.Tobias C. Berner
2020-06-28biology/hyphy: Update to version 2.5.15Joseph Mingrone
2020-06-27biology/diamond: Update to version 0.9.35Joseph Mingrone
2020-06-26Move devel/p5-IO-stringy to devel/p5-IO-Stringy and update to 2.113Sunpoet Po-Chuan Hsieh
2020-06-26biology/py-bx-python: Update 0.8.8 -> 0.8.9Yuri Victorovich
2020-06-22biology/seaview: Update version 5.0.3=>5.0.4Muhammad Moinur Rahman
2020-06-20biology/vsearch: Update to 2.15.0Jason W. Bacon
2020-06-17Move devel/swig30 to devel/swig and update to 4.0.1Sunpoet Po-Chuan Hsieh
2020-06-16biology/py-loompy: Update 2.0.17 -> 3.0.6Yuri Victorovich
2020-06-16biology/py-gffutils: Update 0.10 -> 0.10.1Yuri Victorovich
2020-06-14biology/seaview: Update version 5.0.2=>5.0.3Muhammad Moinur Rahman
2020-06-13Unbreak bulk -aAntoine Brodin
2020-06-13biology/picard-tools: CLI tools for manipulating sequencing dataJason W. Bacon
2020-06-13biology/py-biopython: Set python requirement to 3.6+Jason W. Bacon
2020-06-12biology/diamond: Update to version 0.9.34Joseph Mingrone
2020-06-09biology/py-pysam: Update 0.15.4 -> 0.16.0Yuri Victorovich
2020-06-05Add compiler:c++0x to USES to fix build on GCC-based systems:Mark Linimon
2020-06-05biology/bioawk: BWK awk modified for biological dataJason W. Bacon
2020-06-05biology/subread: Read alignment, quantification and mutation discoveryJason W. Bacon
2020-06-04bioloty/vt: Discovers short variants from Next Generation Sequencing dataJason W. Bacon
2020-06-03biology/diamond: Update to version 0.9.33Joseph Mingrone
2020-05-30biology/hyphy: Update to version 2.5.14Joseph Mingrone
2020-05-30biology/iqtree: Update to version 2.0.6Joseph Mingrone
2020-05-30biology/abyss: Update 2.2.3 -> 2.2.4Yuri Victorovich
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