summaryrefslogtreecommitdiff
path: root/biology
AgeCommit message (Expand)Author
2019-10-16Remove expired ports:Rene Ladan
2019-10-12biology/prodigal: Eliminate a very old version from the portscout discovery p...Yuri Victorovich
2019-10-12biology/prodigal: Update 2.6.3-2 -> 2.6.3-7Yuri Victorovich
2019-10-06biology/star: Upgrade to 2.7.2dJason W. Bacon
2019-10-06biology/fastahack: Upgrade to 1.0.0Jason W. Bacon
2019-10-05biology/mothur: Update 1.42.3 -> 1.43.0Yuri Victorovich
2019-09-28biologi/ncbi-toolkit: Remove dependency on libXpNiclas Zeising
2019-09-27Deprecate x11/libXp, it is deprecated upstreamNiclas Zeising
2019-09-27biology/tophat: Fast splice junction mapper for RNA-Seq readsJason W. Bacon
2019-09-25Update devel/tbb to 2019.8 and bump dependent ports' revisionsGanael LAPLANCHE
2019-09-23biology/py-multiqc: Aggregate bioinformatics analysis reportsJason W. Bacon
2019-09-21devel/openmp: update to 9.0.0Jan Beich
2019-09-21biology/p5-TrimGalore: Upgrade to 0.6.4Jason W. Bacon
2019-09-21biology/fastqc: Upgrade to 0.11.8Jason W. Bacon
2019-09-18biology/diamond: Update to version 0.9.26Joseph Mingrone
2019-09-17Fix some misspelled or duplicated LICENSE_*Tobias Kortkamp
2019-09-16biology/haplohseq: Identify regions of allelic imbalanceJason W. Bacon
2019-09-15Deprecate a few portsAntoine Brodin
2019-09-14Drop C++11 workaround for GCC < 6 after r449590Jan Beich
2019-09-14biology/trimmomatic: Upgrade to 0.39Jason W. Bacon
2019-09-13biology/bedtools: Upgrade to 2.29.0Jason W. Bacon
2019-09-13biology/py-cutadapt: Upgrade to 2.5Jason W. Bacon
2019-09-10biology/phyml: update to 3.3.20190909Fernando Apesteguía
2019-09-07Update to 1.007006 (1.7.6)Sunpoet Po-Chuan Hsieh
2019-09-02Fix after gets(3) retirement using gets_s(3).Cy Schubert
2019-09-01Add a patch to remove use of gets(3)Li-Wen Hsu
2019-08-31biology/py-pysam: Update 0.15.2 -> 0.15.3Yuri Victorovich
2019-08-31biology/ngs-sdk: Update 2.9.6 -> 2.10.0Yuri Victorovich
2019-08-27biology/iqtree: Update to version 1.6.12Joseph Mingrone
2019-08-23biology/gperiodic: fix NLS and other rough edgesKurt Jaeger
2019-08-19devel/boost-*: update to 1.71.0Jan Beich
2019-08-19biology/checkm: Update 1.0.17 -> 1.0.18Yuri Victorovich
2019-08-13Convert to UCL & cleanup pkg-message (categories a-c)Mathieu Arnold
2019-08-13biology/bolt-lmm: Upgrade to 2.3.4Jason W. Bacon
2019-08-11biology/checkm: Update 1.0.16 -> 1.0.17Yuri Victorovich
2019-08-11biology/gperiodic: upgrade 2.0.10 -> 3.0.3Kurt Jaeger
2019-08-11Update to 1.007005 (1.7.5)Sunpoet Po-Chuan Hsieh
2019-08-11Update WWWSunpoet Po-Chuan Hsieh
2019-08-09biology/checkm: Update 1.0.13 -> 1.0.16Yuri Victorovich
2019-08-05biology/hhsuite: fix build on powerpc64Piotr Kubaj
2019-08-04PR: 239613Jason W. Bacon
2019-08-04biology/diamond: Update to version 0.9.25Joseph Mingrone
2019-08-04Mark BROKEN: unfetchableAntoine Brodin
2019-07-26Bump PORTREVISION for ports depending on the canonical version of GCCGerald Pfeifer
2019-07-26biology/gatk: Update 4.0.11.0 -> 4.1.2.0-43Yuri Victorovich
2019-07-25- Update WWWDmitry Marakasov
2019-07-23Prepare for devel/gradle4 and java/openjfx8-devel updatesTobias Kortkamp
2019-07-19biology/treekin: fix build on GCC architecturesPiotr Kubaj
2019-07-12ncbi-blast+: Unbreak build with gcc8 following gcc9 patchJason W. Bacon
2019-07-11New port: biology/libbigwig: C library for handling bigWig files (containing ...Yuri Victorovich
generated by cgit v1.2.3 (git 2.25.1) at 2024-11-09 17:52:19 +0000