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AgeCommit message (Expand)Author
2019-03-18biology/bowtie2: Upgrade to 2.3.5Jason W. Bacon
2019-03-16Qt4 deprecation: Remove Qt4 and its consumes.Tobias C. Berner
2019-03-14biology/cd-hit: Upgrade to 4.8.1Jason W. Bacon
2019-03-04biology/bedtools: unbreak with libc++ 8Jan Beich
2019-02-26biology/paml: Update to version 4.9iJoseph Mingrone
2019-02-25New port: biology/abyss: Assembly By Short Sequences: parallel, paired-end se...Yuri Victorovich
2019-02-24kallisto: Upgrade to 0.45.1, unbundle hstlibJason W. Bacon
2019-02-24biology/unanimity: Upgrade to 3.4.1Jason W. Bacon
2019-02-23biology/ngs-sdk: Update 2.9.3 -> 2.9.4Yuri Victorovich
2019-02-23biology/igv: Update 2.4.16 -> 2.4.19Yuri Victorovich
2019-02-22biology/unanimity is not compatible with python 3.xAntoine Brodin
2019-02-22Update to 1.007005 (1.7.5)Sunpoet Po-Chuan Hsieh
2019-02-21biology/iqtree: Update to version 1.6.10Joseph Mingrone
2019-02-20Update to 1.007003Sunpoet Po-Chuan Hsieh
2019-02-20Update to 1.007004 (1.7.4)Sunpoet Po-Chuan Hsieh
2019-02-20Add p5-Bio-Cluster 1.7.3Sunpoet Po-Chuan Hsieh
2019-02-20biology/pbseqan: Mark deprecatedJason W. Bacon
2019-02-20biology/unanimity: Upgrade to 3.4.0Jason W. Bacon
2019-02-19biology/pbbam: Upgrade to 0.18.0 releaseJason W. Bacon
2019-02-19biology/pbcopper: Upgrade to 0.4.1 releaseJason W. Bacon
2019-02-18vec_splats function is not supported by base GCC. Add USES=compiler:c11Mark Linimon
2019-02-17biology/pbseqan: Minor upgrade to latest commitJason W. Bacon
2019-02-09Update dns/libidn2 to 2.1.1Sunpoet Po-Chuan Hsieh
2019-02-09biology/checkm: Update 1.0.12 -> 1.0.13Yuri Victorovich
2019-02-07- Update WWWDmitry Marakasov
2019-02-05biology/dsr-pdb: Correct typoYuri Victorovich
2019-02-05biology/dsr-pdb: Add c++11 flags because boost isn't found without itYuri Victorovich
2019-02-03New port: biology/figtree: Graphical viewer of phylogenetic treesYuri Victorovich
2019-02-03New port: biology/graphlan: High-quality circular representations of taxonomi...Yuri Victorovich
2019-02-03New port: biology/prodigy-lig: Prediction of protein-small molecule binding a...Yuri Victorovich
2019-02-03New port: biology/prodigal: Protein-coding gene prediction for prokaryotic ge...Yuri Victorovich
2019-02-03Move Objective-C ports to the v2 GNUstep ABI.David Chisnall
2019-02-02biology/py-loompy: Update 2.0.16 -> 2.0.17Yuri Victorovich
2019-01-29New port: biology/dsr-pdb: Simple C++ PDB reader (reads the protein descripti...Yuri Victorovich
2019-01-26biology/py-pysam: Update 0.15.1 -> 0.15.2Yuri Victorovich
2019-01-22Sort categories Makefiles.Mathieu Arnold
2019-01-16Fix Qt5 symbol version scripts to put the catch-all clause first. WhenTijl Coosemans
2019-01-12biology/stacks: Upgrade to 2.3Jason W. Bacon
2019-01-11New port: biology/hisat2: Program for mapping next-generation sequencing readsJason W. Bacon
2019-01-11Fixup bulk -a errors with BUILD_ALL_PYTHON_FLAVORS=yes.Mathieu Arnold
2019-01-07biology/seqtools: fix build on current, if lld is lld7Kurt Jaeger
2019-01-07biology/groopm fails to build with python3Antoine Brodin
2019-01-06Update dns/libidn2 to 2.1.0Sunpoet Po-Chuan Hsieh
2019-01-05Update science/hdf5 to 1.10.4Sunpoet Po-Chuan Hsieh
2019-01-01biology/ncbi-blast+: Upgrade to 2.8.1Jason W. Bacon
2018-12-31biology/diamond: Update to version 0.9.24Joseph Mingrone
2018-12-27biology/iqtree: switch to outsource cmake buildJoseph Mingrone
2018-12-26Update math/eigen3 to 3.3.7Tobias C. Berner
2018-12-25Change cmake default behaviour to outsource.Tobias C. Berner
2018-12-23biology/iqtree: Update to version 1.6.9Joseph Mingrone
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