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AgeCommit message (Expand)Author
2017-12-13biology/diamond: Update to version 0.9.14Joseph Mingrone
2017-12-12biology/seqtools: re-try on powerpc* after r449590Jan Beich
2017-12-11- Those ports fail to build with python3Antoine Brodin
2017-12-11Mark several ports newly broken on arm.Mark Linimon
2017-12-10biology/py-biom-format: Add required dependency on math/py-pandas and doJoseph Mingrone
2017-12-09[new port] biology/p5-TrimGalore: Wrapper around Cutadapt and FastQC for adap...Jason W. Bacon
2017-12-09These are also broken on aarch64 in the same way as armv6/7.Mark Linimon
2017-12-09Mark more ports broken that fail on both armv6 and armv7.Mark Linimon
2017-12-08Revert previous fat-fingered commit. These are the error messages fromMark Linimon
2017-12-08Update errror message on armvX.Mark Linimon
2017-12-05biology/fasttree: update to version 2.1.10Jason W. Bacon
2017-12-05biology/py-macs2: Restrict to python 2.7.Jason W. Bacon
2017-12-04Add a USES=python:env, that will not add a dependency on Python.Mathieu Arnold
2017-12-03Fix configure options for gnustep-makeDavid Chisnall
2017-12-02[new port] biology/py-macs2: Analysis of chromatin immunoprecipitation (ChIP)...Jason W. Bacon
2017-12-02[new port] biology/kallisto: Quantify abundances of transcripts from RNA-Seq ...Jason W. Bacon
2017-12-01Fix packaging with python3Antoine Brodin
2017-12-01[unbreak] biology/bwa: Remove old patch filesJason W. Bacon
2017-11-30[new port] biology/fastqc: Quality control tool for high throughput sequence ...Jason W. Bacon
2017-11-30biology/py-cutadapt: Remove MASTER_SITE_SUBDIR per mentor commentJason W. Bacon
2017-11-30Convert Python ports to FLAVORS.Mathieu Arnold
2017-11-30For ports that are marked BROKEN on armv6, and also fail to build onMark Linimon
2017-11-30biology/bowtie2: Upgrade to 2.3.3.1Jason W. Bacon
2017-11-29[new port] biology/py-cutadapt: Finds and removes adapter sequences, primers, poJason W. Bacon
2017-11-28biology/bwa: Upgrade to 0.7.17Jason W. Bacon
2017-11-27biology/vcftools: Upgrade to latest release 0.1.15Jason W. Bacon
2017-11-26- Switch to options helpersDmitry Marakasov
2017-11-17biology/diamond: Update to version 0.9.13Joseph Mingrone
2017-11-11- Update to 3.1b2Wen Heping
2017-11-09Fix the context of some patches so that they apply with stricter patch(1)Antoine Brodin
2017-11-08biology/diamond: Update to version 0.9.12Joseph Mingrone
2017-11-06Fix USE_GITHUB usage.Mathieu Arnold
2017-11-05biology/py-pysam: Update to 0.13Yuri Victorovich
2017-11-03biology/diamond: Update to 0.9.11Joseph Mingrone
2017-11-01biology/molden: chase another intransparent upstream distfile upgrade.Johannes M Dieterich
2017-10-30- Fix installing scripts and support binariesWen Heping
2017-10-26Update biology/py-pysam to 0.12.0.1Tobias C. Berner
2017-10-25biology/htslib biology/bcftools biology/samtools: Update to 1.6Luca Pizzamiglio
2017-10-21biology/iqtree: Add EXAMPLES option and fix mess with installation ofJoseph Mingrone
2017-10-21New port, biology/iqtree: Efficient phylogenomic softwareJoseph Mingrone
2017-10-13Mark as broken ports with no public distfilesBaptiste Daroussin
2017-10-13Remove dead master sitesBaptiste Daroussin
2017-09-28biology/molden: unbreak by chasing latest intransparent distfile update.Johannes M Dieterich
2017-09-25devel/boost-*: update to 1.65.1Jan Beich
2017-09-25devel/boost-*: enable C++11 featuresJan Beich
2017-09-24biology/ssaha: unbreak with gcc7Jan Beich
2017-09-22Remove USES=execinfo.Mathieu Arnold
2017-09-17Update tbb to 2018 and bump dependent ports' revisionsGanael LAPLANCHE
2017-09-15Update to 1.007002Sunpoet Po-Chuan Hsieh
2017-09-15Add p5-Bio-FeatureIO 1.6.905Sunpoet Po-Chuan Hsieh
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