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AgeCommit message (Expand)Author
2021-04-15biology/ngs-sdk: Fix build on non-amd64 architectures that was broken by expl...Yuri Victorovich
2021-04-15Clean up some thingsTobias Kortkamp
2021-04-14devel/onetbb: Update to 2021.2.0 and bump dependenciesGanael LAPLANCHE
2021-04-12biology/diamond: Update to 2.0.9Joseph Mingrone
2021-04-12biology/mothur: Update to 1.45.2Jason W. Bacon
2021-04-12biology/py-crossmap: Lift over genomics coordinates between assembliesJason W. Bacon
2021-04-12biology/py-bigwig: Python access to bigWig files using libBigWigJason W. Bacon
2021-04-12biology/ncbi-vdb: Restore static libs installed with symlinks as shared libs ...Yuri Victorovich
2021-04-12biology/ngs-sdk: Restore static libs installed with symlinks as shared libs a...Yuri Victorovich
2021-04-12New port: biology/ncbi-vdb: NCBI's virtualized back-end for accessing Sequenc...Yuri Victorovich
2021-04-12biology/ngs-sdk: Improve the 'install' target and other parts of Makefile, re...Yuri Victorovich
2021-04-11biology/minimap2: Update to 2.18Jason W. Bacon
2021-04-10biology/vsearch: Update to 2.17.0Jason W. Bacon
2021-04-07biology/hyphy: Update to 2.5.30Joseph Mingrone
2021-04-07Remove expired ports:Rene Ladan
2021-04-07One more small cleanup, forgotten yesterday.Mathieu Arnold
2021-04-06all: Remove all other $FreeBSD keywords.Mathieu Arnold
2021-04-06Remove # $FreeBSD$ from Makefiles.Mathieu Arnold
2021-04-06biology/pear-merger: enable on aarch64, armv6, armv7, riscv64Piotr Kubaj
2021-04-06biology/trimadap: fix build on powerpc64lePiotr Kubaj
2021-04-06biology/pear-merger: fix build on non-x86Piotr Kubaj
2021-03-30biology/subread: Update to 2.0.2Jason W. Bacon
2021-03-29biology/molden: Fix build with gfortran10Yuri Victorovich
2021-03-28biology/igv: Update 2.8.13 -> 2.9.4Yuri Victorovich
2021-03-28biology/vcflib: fix build on powerpc64lePiotr Kubaj
2021-03-24biology/vsearch: Update to 2.16.0Jason W. Bacon
2021-03-24Mark ports recursively depending on Python 2.7 for expiration on June 23.Rene Ladan
2021-03-23biology/vcf2hap: Generate .hap file from VCF for haplohseqJason W. Bacon
2021-03-23biology/ad2vcf: Add allelic depth info from a SAM stream to a VCF fileJason W. Bacon
2021-03-23- Update Unipro UGENE to version 38.0Alexey Dokuchaev
2021-03-22Fix spelling mistakes, typos, poor wording, hyphenation, jargonisms,Alexey Dokuchaev
2021-03-21biology/vcf-split: Split a multi-sample VCF into single-sample VCFsJason W. Bacon
2021-03-21biology/biolibc: Low-level high-performance bioinformatics libraryJason W. Bacon
2021-03-20biology/htslib: Update to 1.12Jason W. Bacon
2021-03-20biology/generand: Update to 0.1.2Jason W. Bacon
2021-03-20biology/py-multiqc: Update to 1.10Jason W. Bacon
2021-03-20biology/ngs-sdk: Update 2.10.9 -> 2.11.0Yuri Victorovich
2021-03-16PyQt5: Update PyQt5 to 5.15.4 and py-qtbuilder to 1.9.1Loïc Bartoletti
2021-03-15biology/generand: Generate random genomic data in FAST[AQ], SAM, or VCF formatJason W. Bacon
2021-03-14biology/abyss: Add PORTSCOUT lineYuri Victorovich
2021-03-13Move: biology/py-fastTSNE -> math/py-openTSNEYuri Victorovich
2021-03-13biology/gatk: Fix fetchYuri Victorovich
2021-03-12biology/gatk: Update 4.1.9.0 -> 4.2.0.0Yuri Victorovich
2021-03-11biology/diamond: Update to 2.0.8Joseph Mingrone
2021-03-10biology/hmmer: disable on powerpc64le and powerpcspePiotr Kubaj
2021-03-09biology/py-scikit-bio: fix build on powerpc64Piotr Kubaj
2021-03-09biology/py-scikit-bio: fix build on powerpc64lePiotr Kubaj
2021-03-08PyQt5: Update PyQt5 to 5.15.3, QScintilla2 to 2.12.0, py-qtbuilder to 1.9.0Loïc Bartoletti
2021-03-06Unbreak INDEXAntoine Brodin
2021-03-06py-cutadapt: Update to 3.3Jason W. Bacon
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