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AgeCommit message (Expand)Author
2018-02-10biology/py-pysam: Update to 0.14Yuri Victorovich
2018-02-10biology/py-bx-python: Update to 0.8.1Yuri Victorovich
2018-02-08Canonicalize PyPi WWWs:Dmitry Marakasov
2018-02-01biology/diamond: Update to version 0.9.17Joseph Mingrone
2018-02-01- Update to 3.3.20180129Wen Heping
2018-01-31Multiple ports:Jason W. Bacon
2018-01-18devel/boost-*: update to 1.66.0Jan Beich
2018-01-11- Convert to option helper install target (add OPTIONS_DEFINE=DOCSAlexey Dokuchaev
2018-01-06Update Qt5 ports to 5.9.3.Raphael Kubo da Costa
2018-01-05biology/seaview: Update version 4.6.2=>4.6.3Muhammad Moinur Rahman
2018-01-02New USES=eigenTobias C. Berner
2018-01-01- Update to 3.697Wen Heping
2018-01-01- Update to 5.16.0Wen Heping
2017-12-29biology/iqtree: Fix distinfo after upstream re-released v1.6.1Joseph Mingrone
2017-12-28biology/iqtree: Update to version 1.6.1Joseph Mingrone
2017-12-27Disable the extra flag "-march=native" on arm to fix builds.Mark Linimon
2017-12-26Update to 2.0.1Sunpoet Po-Chuan Hsieh
2017-12-22biology/canu: Replace += with = for dependsJason W. Bacon
2017-12-22- Fix build on 11+Dmitry Marakasov
2017-12-22[new port] biology/canu: Single molecule sequence assemblerJason W. Bacon
2017-12-21Try to bring some consistency to ports that have x86-specific pieces.Mark Linimon
2017-12-20Switch from swig 2.0 to swig 3.0Baptiste Daroussin
2017-12-19Mark more recently failing ports broken on aarch64.Mark Linimon
2017-12-18Back out previous commits by jbeich demand.Mark Linimon
2017-12-18Bah. Remove spare line from cut-and-paste.Mark Linimon
2017-12-18Attempt to fix build on non-x86 archs. Untested, but does no harmMark Linimon
2017-12-13biology/diamond: Update to version 0.9.14Joseph Mingrone
2017-12-12biology/seqtools: re-try on powerpc* after r449590Jan Beich
2017-12-11- Those ports fail to build with python3Antoine Brodin
2017-12-11Mark several ports newly broken on arm.Mark Linimon
2017-12-10biology/py-biom-format: Add required dependency on math/py-pandas and doJoseph Mingrone
2017-12-09[new port] biology/p5-TrimGalore: Wrapper around Cutadapt and FastQC for adap...Jason W. Bacon
2017-12-09These are also broken on aarch64 in the same way as armv6/7.Mark Linimon
2017-12-09Mark more ports broken that fail on both armv6 and armv7.Mark Linimon
2017-12-08Revert previous fat-fingered commit. These are the error messages fromMark Linimon
2017-12-08Update errror message on armvX.Mark Linimon
2017-12-05biology/fasttree: update to version 2.1.10Jason W. Bacon
2017-12-05biology/py-macs2: Restrict to python 2.7.Jason W. Bacon
2017-12-04Add a USES=python:env, that will not add a dependency on Python.Mathieu Arnold
2017-12-03Fix configure options for gnustep-makeDavid Chisnall
2017-12-02[new port] biology/py-macs2: Analysis of chromatin immunoprecipitation (ChIP)...Jason W. Bacon
2017-12-02[new port] biology/kallisto: Quantify abundances of transcripts from RNA-Seq ...Jason W. Bacon
2017-12-01Fix packaging with python3Antoine Brodin
2017-12-01[unbreak] biology/bwa: Remove old patch filesJason W. Bacon
2017-11-30[new port] biology/fastqc: Quality control tool for high throughput sequence ...Jason W. Bacon
2017-11-30biology/py-cutadapt: Remove MASTER_SITE_SUBDIR per mentor commentJason W. Bacon
2017-11-30Convert Python ports to FLAVORS.Mathieu Arnold
2017-11-30For ports that are marked BROKEN on armv6, and also fail to build onMark Linimon
2017-11-30biology/bowtie2: Upgrade to 2.3.3.1Jason W. Bacon
2017-11-29[new port] biology/py-cutadapt: Finds and removes adapter sequences, primers, poJason W. Bacon
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