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AgeCommit message (Expand)Author
2019-09-02Fix after gets(3) retirement using gets_s(3).Cy Schubert
2019-09-01Add a patch to remove use of gets(3)Li-Wen Hsu
2019-08-31biology/py-pysam: Update 0.15.2 -> 0.15.3Yuri Victorovich
2019-08-31biology/ngs-sdk: Update 2.9.6 -> 2.10.0Yuri Victorovich
2019-08-27biology/iqtree: Update to version 1.6.12Joseph Mingrone
2019-08-23biology/gperiodic: fix NLS and other rough edgesKurt Jaeger
2019-08-19devel/boost-*: update to 1.71.0Jan Beich
2019-08-19biology/checkm: Update 1.0.17 -> 1.0.18Yuri Victorovich
2019-08-13Convert to UCL & cleanup pkg-message (categories a-c)Mathieu Arnold
2019-08-13biology/bolt-lmm: Upgrade to 2.3.4Jason W. Bacon
2019-08-11biology/checkm: Update 1.0.16 -> 1.0.17Yuri Victorovich
2019-08-11biology/gperiodic: upgrade 2.0.10 -> 3.0.3Kurt Jaeger
2019-08-11Update to 1.007005 (1.7.5)Sunpoet Po-Chuan Hsieh
2019-08-11Update WWWSunpoet Po-Chuan Hsieh
2019-08-09biology/checkm: Update 1.0.13 -> 1.0.16Yuri Victorovich
2019-08-05biology/hhsuite: fix build on powerpc64Piotr Kubaj
2019-08-04PR: 239613Jason W. Bacon
2019-08-04biology/diamond: Update to version 0.9.25Joseph Mingrone
2019-08-04Mark BROKEN: unfetchableAntoine Brodin
2019-07-26Bump PORTREVISION for ports depending on the canonical version of GCCGerald Pfeifer
2019-07-26biology/gatk: Update 4.0.11.0 -> 4.1.2.0-43Yuri Victorovich
2019-07-25- Update WWWDmitry Marakasov
2019-07-23Prepare for devel/gradle4 and java/openjfx8-devel updatesTobias Kortkamp
2019-07-19biology/treekin: fix build on GCC architecturesPiotr Kubaj
2019-07-12ncbi-blast+: Unbreak build with gcc8 following gcc9 patchJason W. Bacon
2019-07-11New port: biology/libbigwig: C library for handling bigWig files (containing ...Yuri Victorovich
2019-07-11ncbi-blast+: Fix build with gcc9Jason W. Bacon
2019-07-09Update security/nettle to 3.5.1Sunpoet Po-Chuan Hsieh
2019-07-08- Update WWWDmitry Marakasov
2019-06-28biology/mothur: Update 1.42.2 -> 1.42.3Yuri Victorovich
2019-06-25Mark this port as not buildable on powerpc64:Mark Linimon
2019-06-24biology/iqtree: Update to version 1.6.11Joseph Mingrone
2019-06-24biology/viennarna: Make it less/not prone to failures due to hardcoded C++ li...Yuri Victorovich
2019-06-24New port: biology/viennarna: Alignment tools for the structural analysis of RNAYuri Victorovich
2019-06-22Use USES=pathfixSunpoet Po-Chuan Hsieh
2019-06-21biology/abyss: fix build on big-endian architecturesPiotr Kubaj
2019-06-21Enable workaround for building on powerpc64.Mark Linimon
2019-06-19biology/mothur: Update 1.42.1-3 -> 1.42.2Yuri Victorovich
2019-06-19biology/py-bx-python: Update 0.8.2 -> 0.8.4Yuri Victorovich
2019-06-15New port: biology/treekin: Efficient computation of RNA folding dynamicsYuri Victorovich
2019-06-14biology/ncbi-blast+: Fix build on powerpc64, add run dep for update_blastdb.plJason W. Bacon
2019-06-12biology/ncbi-blast+: Upgrade to 2.9.0Jason W. Bacon
2019-06-12biology/kallisto: Upgrade to 0.46.0Jason W. Bacon
2019-06-08biology/tRNAscan-SE: Update to 2.0.3Steve Wills
2019-06-01biology/igv: Update 2.5.2 -> 2.5.3Yuri Victorovich
2019-05-30biology/tRNAscan-SE: fix build with GCC-based architectursPiotr Kubaj
2019-05-29biology/cufflinks: Fix build on i386 by removing the hard-coded -m64Yuri Victorovich
2019-05-26biology/bolt-lmm: Mixed model association testing and variance component anal...Jason W. Bacon
2019-05-25New port: biology/cufflinks: Cufflinks assembles transcripts, estimates their...Yuri Victorovich
2019-05-22biology/hhsuite: Fix build on platforms where SIMD instruction set doesn't ex...Yuri Victorovich
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