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AgeCommit message (Expand)Author
2020-07-04Chanse update of devel/libffiNiclas Zeising
2020-07-04biology/psi88: Unbreak build with GCC 10Tobias Kortkamp
2020-07-04biology/bowtie: Unbreak build with GCC 10Tobias Kortkamp
2020-07-03biology/diamond: Update to version 0.9.36Joseph Mingrone
2020-06-30Bump devel/jsoncpp consumers after r540853.Tobias C. Berner
2020-06-28biology/hyphy: Update to version 2.5.15Joseph Mingrone
2020-06-27biology/diamond: Update to version 0.9.35Joseph Mingrone
2020-06-26Move devel/p5-IO-stringy to devel/p5-IO-Stringy and update to 2.113Sunpoet Po-Chuan Hsieh
2020-06-26biology/py-bx-python: Update 0.8.8 -> 0.8.9Yuri Victorovich
2020-06-22biology/seaview: Update version 5.0.3=>5.0.4Muhammad Moinur Rahman
2020-06-20biology/vsearch: Update to 2.15.0Jason W. Bacon
2020-06-17Move devel/swig30 to devel/swig and update to 4.0.1Sunpoet Po-Chuan Hsieh
2020-06-16biology/py-loompy: Update 2.0.17 -> 3.0.6Yuri Victorovich
2020-06-16biology/py-gffutils: Update 0.10 -> 0.10.1Yuri Victorovich
2020-06-14biology/seaview: Update version 5.0.2=>5.0.3Muhammad Moinur Rahman
2020-06-13Unbreak bulk -aAntoine Brodin
2020-06-13biology/picard-tools: CLI tools for manipulating sequencing dataJason W. Bacon
2020-06-13biology/py-biopython: Set python requirement to 3.6+Jason W. Bacon
2020-06-12biology/diamond: Update to version 0.9.34Joseph Mingrone
2020-06-09biology/py-pysam: Update 0.15.4 -> 0.16.0Yuri Victorovich
2020-06-05Add compiler:c++0x to USES to fix build on GCC-based systems:Mark Linimon
2020-06-05biology/bioawk: BWK awk modified for biological dataJason W. Bacon
2020-06-05biology/subread: Read alignment, quantification and mutation discoveryJason W. Bacon
2020-06-04bioloty/vt: Discovers short variants from Next Generation Sequencing dataJason W. Bacon
2020-06-03biology/diamond: Update to version 0.9.33Joseph Mingrone
2020-05-30biology/hyphy: Update to version 2.5.14Joseph Mingrone
2020-05-30biology/iqtree: Update to version 2.0.6Joseph Mingrone
2020-05-30biology/abyss: Update 2.2.3 -> 2.2.4Yuri Victorovich
2020-05-30Clean up some thingsTobias Kortkamp
2020-05-29biology/py-biopython: Upgrade to 1.77Jason W. Bacon
2020-05-28biology/gatk: Update 4.1.5.0 -> 4.1.7.0Yuri Victorovich
2020-05-28biology/iqtree: Update to version 2.0.5Joseph Mingrone
2020-05-27Sanitize COMMENT per Section 5.6 of the FreeBSD Porter's Handbook (part 1).Alexey Dokuchaev
2020-05-26Mark as BROKEN on powerpc64 12. It builds on -head.Mark Linimon
2020-05-24biology/py-dnaio: Upgrade to 0.4.2Jason W. Bacon
2020-05-19biology/ugene: prepare for Qt5-5.15Tobias C. Berner
2020-05-17Mark as BROKEN on powerpc64:Mark Linimon
2020-05-16Bump PORTREVISION for security/nettle shlib changeSunpoet Po-Chuan Hsieh
2020-05-16New port: biology/py-hits: Utilities for processing high-throughput sequencin...Yuri Victorovich
2020-05-16biology/py-scikit-bio: Fix licenseYuri Victorovich
2020-05-16biology/py-scikit-bio: Remove bogus linesYuri Victorovich
2020-05-16New port: biology/py-scikit-bio: Data structures, algorithms, educational res...Yuri Victorovich
2020-05-16New port: biology/py-pandas-charm: Library for getting character matrices int...Yuri Victorovich
2020-05-16New port: biology/py-ete3: Framework for the analysis and visualization of treesYuri Victorovich
2020-05-15Add compiler:c++11-lang to USES to fix build on GCC-based systems:Mark Linimon
2020-05-15New port: biology/scrm: Coalescent simulator for biological sequencesYuri Victorovich
2020-05-11Update SphinxDanilo G. Baio
2020-05-11biology/hhsuite: fix build on powerpc64 elfv2Piotr Kubaj
2020-05-10- Resurrect and unbreak by updating to version 34.0Alexey Dokuchaev
2020-05-09Update devel/gmake to 4.3.Tijl Coosemans
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