summaryrefslogtreecommitdiff
path: root/biology
AgeCommit message (Expand)Author
2019-05-30biology/tRNAscan-SE: fix build with GCC-based architectursPiotr Kubaj
2019-05-29biology/cufflinks: Fix build on i386 by removing the hard-coded -m64Yuri Victorovich
2019-05-26biology/bolt-lmm: Mixed model association testing and variance component anal...Jason W. Bacon
2019-05-25New port: biology/cufflinks: Cufflinks assembles transcripts, estimates their...Yuri Victorovich
2019-05-22biology/hhsuite: Fix build on platforms where SIMD instruction set doesn't ex...Yuri Victorovich
2019-05-20biology/fastp: Remove redundant USE_GCCJason W. Bacon
2019-05-20biology/mothur: Add USES=compiler:c++11-langYuri Victorovich
2019-05-20New port: biology/mothur: Software for bioinformatics of the microbial ecolog...Yuri Victorovich
2019-05-20- Update to 3.3.20190321Wen Heping
2019-05-20- Update to 5.18.0Wen Heping
2019-05-19New port: biology/hhsuite: Remote protein homology detection suiteYuri Victorovich
2019-05-18biology/gemma: Lowercase PORTNAME, remove unnecesary USE_GCCJason W. Bacon
2019-05-17biology/gemma: Genome-wide Efficient Mixed Model AssociationJason W. Bacon
2019-05-13biology/jellyfish: Upgrade to 2.2.10, patch for powerpc64Jason W. Bacon
2019-05-11biology/vsearch: Update to 2.13.4Jason W. Bacon
2019-05-11biology/igv: Update 2.5.0 -> 2.5.2Yuri Victorovich
2019-05-11biology/trimadap: Mark only for amd64 and i386Jason W. Bacon
2019-05-10biology/stacks: Remove obsolete pkg-message regarding web interfaceJason W. Bacon
2019-05-10biology/stacks: Upgrade to 2.4Jason W. Bacon
2019-05-09biology/vsearch: Remove powerpc64 supportJason W. Bacon
2019-05-09biology/vsearch: Versatile open-source tool for metagenomicsJason W. Bacon
2019-05-08devel/openmp: phase outJan Beich
2019-05-07biology/tRNAscan-SE: fix build with GCC-based architecturesPiotr Kubaj
2019-05-05biology/minimap2: Upgrade to 2.17Jason W. Bacon
2019-05-04biology/ddocent: Upgrade to 2.7.8Jason W. Bacon
2019-05-04biology/fastp: Respect WITH_DEBUG - do not strip binaryJason W. Bacon
2019-05-03These ports now build on aarch64.Mark Linimon
2019-05-03biology/fastp: Ultra-fast all-in-one FASTQ preprocessorJason W. Bacon
2019-05-02biology/star: Force newer GCC on platforms with GCC 4.2 baseJason W. Bacon
2019-04-27biology/py-cutadapt: Upgrade to 2.3Jason W. Bacon
2019-04-25Clean up plistAntoine Brodin
2019-04-24biology/minimap2: Pairwise aligner for genomic and spliced nucleotide sequencesJason W. Bacon
2019-04-24biology/bowtie2: Clarify CPU-specificityJason W. Bacon
2019-04-23biology/star: Modify PKGBASE to avoid conflict with archivers/starJason W. Bacon
2019-04-23Fix typoSunpoet Po-Chuan Hsieh
2019-04-22Sort PLISTSunpoet Po-Chuan Hsieh
2019-04-22Related to revision 499061 bump ports with USES=fortran to have themGerald Pfeifer
2019-04-21biology/star: Spliced Transcripts Alignment to a ReferenceJason W. Bacon
2019-04-21biology/bowtie2: Upgrade to 2.3.5.1Jason W. Bacon
2019-04-18biology/canu: Fix build on powerpc64 and aarch64Jason W. Bacon
2019-04-12New port: biology/py-xenaPython: API for Xena Hub to access genetic informati...Yuri Victorovich
2019-04-12devel/boost-*: update to 1.70.0Jan Beich
2019-04-10Bump a few PORTREVISIONs after r498529Antoine Brodin
2019-04-09Update devel/readline to 8.0Sunpoet Po-Chuan Hsieh
2019-04-06Use real PORTVERSION of devel/p5-Parse-RecDescentSunpoet Po-Chuan Hsieh
2019-04-04biology/igv: Update 2.4.19 -> 2.5.0Yuri Victorovich
2019-04-01- Fix build in head i386Danilo Egea Gondolfo
2019-03-31biology/py-fastTSNE: Add the PORTSCOUT lineYuri Victorovich
2019-03-31biology/ngs-sdk: Update 2.9.4 -> 2.9.6Yuri Victorovich
2019-03-30- Add LICENSEDmitry Marakasov
generated by cgit v1.2.3 (git 2.25.1) at 2024-12-30 21:08:00 +0000