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AgeCommit message (Expand)Author
2018-05-27Update WWWSunpoet Po-Chuan Hsieh
2018-05-22biology/hyphy: Update to version 2.3.13Joseph Mingrone
2018-05-21biology/clustal-omega: Multiple alignment of nucleic acid and protein, replac...Jason W. Bacon
2018-05-21biology/clustalx: Multiple alignment of nucleic acid and protein sequences wi...Jason W. Bacon
2018-05-21biology/clustalw: Fix license, take maintainershipJason W. Bacon
2018-05-20biolog/molden: unbreak after at least two intransparent distfile updatesJohannes M Dieterich
2018-05-16biology/fastx-toolkit: Fix build on FreeBSD 12Jason W. Bacon
2018-05-15Add upstream patch to fix the build with Qt 5.10.Raphael Kubo da Costa
2018-05-15- Update to 3.3.20180214Wen Heping
2018-05-14biology/diamond: Update to version 0.9.22Joseph Mingrone
2018-05-14biology/hyphy: Bump PORTREVISION after upstream rerolled releaseJoseph Mingrone
2018-05-13biology/py-biopython: Unbreak on python3; Add licenseYuri Victorovich
2018-05-11biology/iqtree: Update to version 1.6.5Joseph Mingrone
2018-05-11New port, biology/hyphy: Hypothesis testing using PhylogeniesJoseph Mingrone
2018-05-07Mark BROKEN: checksum and size mismatchAntoine Brodin
2018-05-05Deprecate ports broken for more than 6 monthsAntoine Brodin
2018-04-30biology/iqtree: Update to version 1.6.4Joseph Mingrone
2018-04-26biology/paml: Set PORTVERSION directlyJoseph Mingrone
2018-04-26biology/canu: Upgrade to 1.7 releaseJason W. Bacon
2018-04-25biology/paml: Update to version 4.9hJoseph Mingrone
2018-04-25Switch all pypi.python.org WWWs to a new PyPi home pypi.org whereDmitry Marakasov
2018-04-24biology/unanimity: Pacific Biosciences consensus library and applicationsJason W. Bacon
2018-04-24biology/seaview: Update version 4.6.3=>4.6.5Muhammad Moinur Rahman
2018-04-23biology/pbcopper: Core C++ library for Pacific Biosciences toolsJason W. Bacon
2018-04-23biology/pbbam: PacBio BAM C++ library, with SWIG bindingsJason W. Bacon
2018-04-21biology/pbseqan: Pacific Biosciences patched and stripped down SeqAnJason W. Bacon
2018-04-20biology/diamond: Update to version 0.9.21Joseph Mingrone
2018-04-20biology/ddocent: Bash pipeline for RAD sequencingJason W. Bacon
2018-04-20biology/freebayes: Bayesian haplotype-based polymorphism discovery and genoty...Jason W. Bacon
2018-04-19biology/bedtools: Upgrade to 2.27.1Jason W. Bacon
2018-04-18devel/boost-*: update to 1.67.0Jan Beich
2018-04-17biology/vcflib: C++ library and CLI tools for parsing and manipulating VCF filesJason W. Bacon
2018-04-16biology/fastahack: Utility for indexing and sequence extraction from FASTA filesJason W. Bacon
2018-04-15biology/smithwaterman: Smith-waterman-gotoh alignment algorithmJason W. Bacon
2018-04-14biology/tabixpp: C++ wrapper to tabix indexerJason W. Bacon
2018-04-09- Update to 1.71Wen Heping
2018-04-04biology/pear-merger: Memory-efficient and accurate paired-end read mergerJason W. Bacon
2018-04-03biology/seqtk: Tool for processing sequences in FASTA/FASTQ formatJason W. Bacon
2018-04-03biology/trimadap: Trim adapter sequences from Illumina dataJason W. Bacon
2018-04-02biology/rainbow: Efficient clustering and assembling of short readsJason W. Bacon
2018-04-01- Update to 1.61Wen Heping
2018-03-31biology/stacks: Software pipeline for building loci from short-read sequencesJason W. Bacon
2018-03-29biology/libgtextutils: Unbreak for FreeBSD 12Jason W. Bacon
2018-03-28biology/bamtools: API and toolkit for handling BAM filesJason W. Bacon
2018-03-27biology/ncbi-blast+: Upgrade to 2.7.1Jason W. Bacon
2018-03-23biology/iqtree: Update to version 1.6.3Joseph Mingrone
2018-03-21biology/py-pysam: Update to 0.14.1Yuri Victorovich
2018-03-18Mark broken on armvX and mips.Mark Linimon
2018-03-18Mark the latest version broken on armvX. Note: 2.1.8.3 built ok.Mark Linimon
2018-03-17biology/diamond: Update to version 0.9.19Joseph Mingrone
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