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2021-05-06Deorbit RESTRICTED && NO_CDROM, part two.Mathieu Arnold
2021-05-06Deorbit RESTRICTED && NO_CDROM, part one.Mathieu Arnold
2021-05-05biology/py-resdk: Update 13.1.0 -> 13.2.0Yuri Victorovich
2021-05-04biology/py-cutadapt: Update strict py-dnaio dep versionJason W. Bacon
2021-05-04biology/py-dnaio: Update to 0.5.1Jason W. Bacon
2021-05-01Clean up some thingsTobias Kortkamp
2021-04-27biology/py-orange3-bioinformatics: Update 3.2.2 -> 4.3.1Yuri Victorovich
2021-04-26biology/ncbi-entrez-direct: Update to 14.9.20210423_1Jason W. Bacon
2021-04-26devel/libepoll-shim: update to 0.0.20210418Jan Beich
2021-04-25biology/jalview: Update 2.07 -> 2.11.1.4Yuri Victorovich
2021-04-25Hook biology/ucsc-userapps to the buildAntoine Brodin
2021-04-25biology/ucsc-userapps: Command line tools from the UCSC Genome Browser projectJason W. Bacon
2021-04-24biology/ncbi-entrez-direct: Access to the NCBI's interconnected databasesJason W. Bacon
2021-04-23biology/viennarna: Update 2.4.17 -> 2.4.18Yuri Victorovich
2021-04-23biology/py-pyfaid: Update 0.5.9.2 -> 0.5.9.5Yuri Victorovich
2021-04-22biology/abyss: Update 2.3.0-3 -> 2.3.1Yuri Victorovich
2021-04-21biology/py-crossmap: Update to 0.5.4Jason W. Bacon
2021-04-21biology/py-crossmap: Fix build with Python 3.8+Kai Knoblich
2021-04-21biology/py-bigwig: Fix packaging with Python 3.8+Kai Knoblich
2021-04-19New port: biology/py-resdk: Resolwe SDK to interact with Resolwe server and R...Yuri Victorovich
2021-04-19biology/snpeff: Improvements to Makefile and patchesJason W. Bacon
2021-04-18biology/abyss: Update 2.2.5 -> 2.3.0-3Yuri Victorovich
2021-04-18biology/snpeff: Genetic variant annotation and effect prediction toolboxJason W. Bacon
2021-04-18biology/bbmap: BBMap short read aligner, and other bioinformatic toolsJason W. Bacon
2021-04-18biology/bowtie2: Add support for powerpc64leJason W. Bacon
2021-04-18biology/readseq: Remove $FreeBSD$ tag inserted to silence portlintJason W. Bacon
2021-04-18biology/readseq: Read and reformat biosequences, Java command-line versionJason W. Bacon
2021-04-16biology/seqkit: Change WWW to the project URL (from GitHub URL)Yuri Victorovich
2021-04-16New port: biology/seqkit: Cross-platform and ultrafast toolkit for FASTA/Q fi...Yuri Victorovich
2021-04-15biology/ngs-sdk: Fix build on non-amd64 architectures that was broken by expl...Yuri Victorovich
2021-04-15Clean up some thingsTobias Kortkamp
2021-04-14devel/onetbb: Update to 2021.2.0 and bump dependenciesGanael LAPLANCHE
2021-04-12biology/diamond: Update to 2.0.9Joseph Mingrone
2021-04-12biology/mothur: Update to 1.45.2Jason W. Bacon
2021-04-12biology/py-crossmap: Lift over genomics coordinates between assembliesJason W. Bacon
2021-04-12biology/py-bigwig: Python access to bigWig files using libBigWigJason W. Bacon
2021-04-12biology/ncbi-vdb: Restore static libs installed with symlinks as shared libs ...Yuri Victorovich
2021-04-12biology/ngs-sdk: Restore static libs installed with symlinks as shared libs a...Yuri Victorovich
2021-04-12New port: biology/ncbi-vdb: NCBI's virtualized back-end for accessing Sequenc...Yuri Victorovich
2021-04-12biology/ngs-sdk: Improve the 'install' target and other parts of Makefile, re...Yuri Victorovich
2021-04-11biology/minimap2: Update to 2.18Jason W. Bacon
2021-04-10biology/vsearch: Update to 2.17.0Jason W. Bacon
2021-04-07biology/hyphy: Update to 2.5.30Joseph Mingrone
2021-04-07Remove expired ports:Rene Ladan
2021-04-07One more small cleanup, forgotten yesterday.Mathieu Arnold
2021-04-06all: Remove all other $FreeBSD keywords.Mathieu Arnold
2021-04-06Remove # $FreeBSD$ from Makefiles.Mathieu Arnold
2021-04-06biology/pear-merger: enable on aarch64, armv6, armv7, riscv64Piotr Kubaj
2021-04-06biology/trimadap: fix build on powerpc64lePiotr Kubaj
2021-04-06biology/pear-merger: fix build on non-x86Piotr Kubaj
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