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path: root/biology
AgeCommit message (Expand)Author
2021-11-04biology/vcflib: Update to 1.0.2Jason W. Bacon
2021-11-03biology/freebayes: Update to 1.3.5Jason W. Bacon
2021-11-03biology/py-python-libsbml: limit supported python versions, fix buildDmitry Marakasov
2021-11-02biology/py-libnuml: fix install with python 3.10+Dmitry Marakasov
2021-11-02biology/py-libsedml: fix install with python 3.10+Dmitry Marakasov
2021-11-02biology/libsbml: Fix build with Python 3.10Po-Chuan Hsieh
2021-11-01biology/libsbml: limit supported python versionsDmitry Marakasov
2021-11-01biology/py-pysam: limit supported python versionsDmitry Marakasov
2021-10-30biology/biostar-tools: Add biology/igv to metaport depsJason W. Bacon
2021-10-29*/*: Remove redundant '-[0-9]*' from CONFLICTSStefan Eßer
2021-10-25devel/grpc: Update to 1.41.0Po-Chuan Hsieh
2021-10-25*/Makefile: Sort SUBDIRsPo-Chuan Hsieh
2021-10-25Style: improve ONLY_FOR_ARCHS_REASON (grammar, markup, etc.)Alexey Dokuchaev
2021-10-22biology/py-resdk: Update 13.4.0 -> 13.6.0takefu
2021-10-22biology/mafft: Update to 7.267Wen Heping
2021-10-20biology/bamutil: Update to 1.0.15Jason W. Bacon
2021-10-20biology/fastp: Update to 0.23.1Jason W. Bacon
2021-10-16*: fix tab vs. space issues, and comments according to the guide.Jimmy Olgeni
2021-10-15biology/treekin: UnbreakYuri Victorovich
2021-10-14biology/biostar-tools: Add py-deeptools to metaport depsJason W. Bacon
2021-10-14biology/py-deeptools: User-friendly tools for exploring deep-sequencing dataJason W. Bacon
2021-10-14biology/ugene: update UniPro UGENE to version 40.1 (bugfix release).Alexey Dokuchaev
2021-10-14biology/py-crossmap: chase ad5a0604c41cJan Beich
2021-10-13biology/py-bigwig: Rename to biology/py-pybigwigJason W. Bacon
2021-10-13biology/py-pybigwig: remove, duplicate of biology/py-bigwigAntoine Brodin
2021-10-13biology/py-deeptoolsintervals: Python interface for deepTools interval treesJason W. Bacon
2021-10-13biology/py-py-pybigwig: Patch out setup.py warningJason W. Bacon
2021-10-13biology/py-pybigwig: Fix poudriere buildJason W. Bacon
2021-10-13biology/py-pybigwig: Python access to bigWig files using libBigWigJason W. Bacon
2021-10-13biology/py-py2bit: Python interface for 2bit packed nucleotide filesJason W. Bacon
2021-10-12biology/biostar-tools: Add biology/bamutil to metaport depsJason W. Bacon
2021-10-12biology/bamutil: Utilities for working with SAM/BAM filesJason W. Bacon
2021-10-12biology/diamond: Update to 2.0.12Joseph Mingrone
2021-10-12*: Clean up some thingsTobias Kortkamp
2021-10-12biology/py-biopython: Update to 1.79Wen Heping
2021-10-09biology/diamond: enable on powerpc64lePiotr Kubaj
2021-10-08biology/diamond: enable on powerpc64Piotr Kubaj
2021-10-08biology/libneurosim: New port: Common interfaces for neuronal simulatorsYuri Victorovich
2021-10-08biology/hyphy: Enable on aarch64.Mikael Urankar
2021-10-08biology/diamond: Enable on aarch64.Mikael Urankar
2021-10-06biology/pooler: fix build on powerpcPiotr Kubaj
2021-10-03*/*: Remove compiler:openmp from Mk/Uses/compiler.mkFernando Apesteguía
2021-10-01biology/ncbi-cxx-toolkit: Update 25.0.0 -> 25.2.0Yuri Victorovich
2021-09-30cleanup: drop support for EOL FreeBSD 11.XRene Ladan
2021-09-27biology/biostar-tools: Add biology/kallisto run depend to metaportJason W. Bacon
2021-09-26biology/unikmer: Update 0.18.4 -> 0.18.8Yuri Victorovich
2021-09-25biology/vcftools: Add CPE informationBernhard Froehlich
2021-09-24biology/ucsc-userapps: Add "kent" command in ${PREFIX}/binJason W. Bacon
2021-09-24biology/emboss: Add "emboss" command in ${LOCALBASE}/binJason W. Bacon
2021-09-21biology/bioparser: Update 3.0.12-2 -> 3.0.15Yuri Victorovich
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