summaryrefslogtreecommitdiff
path: root/biology
AgeCommit message (Expand)Author
2021-10-14biology/biostar-tools: Add py-deeptools to metaport depsJason W. Bacon
2021-10-14biology/py-deeptools: User-friendly tools for exploring deep-sequencing dataJason W. Bacon
2021-10-14biology/ugene: update UniPro UGENE to version 40.1 (bugfix release).Alexey Dokuchaev
2021-10-14biology/py-crossmap: chase ad5a0604c41cJan Beich
2021-10-13biology/py-bigwig: Rename to biology/py-pybigwigJason W. Bacon
2021-10-13biology/py-pybigwig: remove, duplicate of biology/py-bigwigAntoine Brodin
2021-10-13biology/py-deeptoolsintervals: Python interface for deepTools interval treesJason W. Bacon
2021-10-13biology/py-py-pybigwig: Patch out setup.py warningJason W. Bacon
2021-10-13biology/py-pybigwig: Fix poudriere buildJason W. Bacon
2021-10-13biology/py-pybigwig: Python access to bigWig files using libBigWigJason W. Bacon
2021-10-13biology/py-py2bit: Python interface for 2bit packed nucleotide filesJason W. Bacon
2021-10-12biology/biostar-tools: Add biology/bamutil to metaport depsJason W. Bacon
2021-10-12biology/bamutil: Utilities for working with SAM/BAM filesJason W. Bacon
2021-10-12biology/diamond: Update to 2.0.12Joseph Mingrone
2021-10-12*: Clean up some thingsTobias Kortkamp
2021-10-12biology/py-biopython: Update to 1.79Wen Heping
2021-10-09biology/diamond: enable on powerpc64lePiotr Kubaj
2021-10-08biology/diamond: enable on powerpc64Piotr Kubaj
2021-10-08biology/libneurosim: New port: Common interfaces for neuronal simulatorsYuri Victorovich
2021-10-08biology/hyphy: Enable on aarch64.Mikael Urankar
2021-10-08biology/diamond: Enable on aarch64.Mikael Urankar
2021-10-06biology/pooler: fix build on powerpcPiotr Kubaj
2021-10-03*/*: Remove compiler:openmp from Mk/Uses/compiler.mkFernando Apesteguía
2021-10-01biology/ncbi-cxx-toolkit: Update 25.0.0 -> 25.2.0Yuri Victorovich
2021-09-30cleanup: drop support for EOL FreeBSD 11.XRene Ladan
2021-09-27biology/biostar-tools: Add biology/kallisto run depend to metaportJason W. Bacon
2021-09-26biology/unikmer: Update 0.18.4 -> 0.18.8Yuri Victorovich
2021-09-25biology/vcftools: Add CPE informationBernhard Froehlich
2021-09-24biology/ucsc-userapps: Add "kent" command in ${PREFIX}/binJason W. Bacon
2021-09-24biology/emboss: Add "emboss" command in ${LOCALBASE}/binJason W. Bacon
2021-09-21biology/bioparser: Update 3.0.12-2 -> 3.0.15Yuri Victorovich
2021-09-21*/Makefile: Sort SUBDIRsPo-Chuan Hsieh
2021-09-20biology/py-PySCeS: Update 0.9.8a -> 1.0.0Yuri Victorovich
2021-09-19biology/py-libsedml: New port: SED-ML library for PythonYuri Victorovich
2021-09-19biology/libsedml: New port: C++ SED-ML libraryYuri Victorovich
2021-09-19biology/py-libnuml: Fix typoYuri Victorovich
2021-09-18biology/py-libnuml: New port: Numerical Markup Language for PythonYuri Victorovich
2021-09-18biology/libnuml: New port: C++ library for Numerical Markup LanguageYuri Victorovich
2021-09-18biology/seqkit: Update 0.16.1 -> 2.0.1Yuri Victorovich
2021-09-17biology/jellyfish: Switch to static tarball and update license infoJoseph Mingrone
2021-09-17biology/biolibc: Update to 0.2.0.11Jason W. Bacon
2021-09-16biology/ugene: update Unipro UGENE to version 40.0.Alexey Dokuchaev
2021-09-14biology/py-PySCeS: Update 0.9.8post1 -> 0.9.8aYuri Victorovich
2021-09-13biology/hhsuite: Fix build on aarch64Mikael Urankar
2021-09-12biology/mmseqs2: disable on 32-bitsPiotr Kubaj
2021-09-11biology/jellyfish: Fix unused open mode variableJason W. Bacon
2021-09-10biology/htslib: Add CPE informationBernhard Froehlich
2021-09-07biology/biostar-tools: Add biology/sam2pairwise to run depsJason W. Bacon
2021-09-07biology/sam2pairwise: Show pairwise alignment for each read in a SAM fileJason W. Bacon
2021-09-06biology/emboss: Put emboss-shell in default PATHJason W. Bacon
generated by cgit v1.2.3 (git 2.25.1) at 2024-12-25 19:00:24 +0000