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# $FreeBSD$
PORTNAME= unanimity
DISTVERSIONPREFIX= v
DISTVERSION= 3.1.0
PORTREVISION= 1
CATEGORIES= biology
MAINTAINER= jwb@FreeBSD.org
COMMENT= Pacific Biosciences consensus library and applications
LICENSE= BSD3CLAUSE
LICENSE_FILE= ${WRKSRC}/LICENSE
BROKEN_aarch64= fails to compile: mmintrin.h:47:5: use of undeclared identifier '__builtin_ia32_emms'; did you mean '__builtin_isless'?
# Sensitive to dependency versions, use latest commit for everything
BUILD_DEPENDS= pbseqan>=g20171002:biology/pbseqan \
pbbam>=g20180416:biology/pbbam \
pbcopper>=g20180413:biology/pbcopper
LIB_DEPENDS= libhts.so:biology/htslib \
libboost_regex.so:devel/boost-libs
USES= cmake compiler:c++14-lang pkgconfig python
USE_GITHUB= yes
GH_ACCOUNT= PacificBiosciences
CMAKE_ARGS+= -DHTSLIB_INCLUDE_DIRS:STRING=${LOCALBASE}/include/htslib \
-DHTSLIB_LIBRARIES:STRING="-L${LOCALBASE}/lib -lhts" \
-DPacBioBAM_INCLUDE_DIRS:STRING=${LOCALBASE}/include/pbbam \
-DPacBioBAM_LIBRARIES:STRING="-L${LOCALBASE}/lib -lpbbam" \
-DSEQAN_INCLUDE_DIRS:STRING=${LOCALBASE}/include/PacBio \
-Dpbcopper_INCLUDE_DIRS=${LOCALBASE}/include \
-Dpbcopper_LIBRARIES="-L${LOCALBASE}/lib -lpbcopper"
CFLAGS_i386= -msse2 -Wno-c++11-narrowing
PLIST_FILES= bin/arrow bin/ccs bin/gcpp lib/libcc2.a lib/libunanimity.a
post-install:
${INSTALL_DATA} ${WRKSRC}/src/libcc2.a ${WRKSRC}/src/libunanimity.a \
${STAGEDIR}${PREFIX}/lib
.include <bsd.port.mk>
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