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# Created by: Hannes Hauswedell <h2+fbsdports@fsfe.org>
# $FreeBSD$
PORTNAME= ugene
DISTVERSION= 1.12.3
CATEGORIES= biology
MASTER_SITES= http://ugene.unipro.ru/downloads/
DISTFILES= ${DISTNAME}${EXTRACT_SUFX} ${PORTDOCS}
DIST_SUBDIR= ${PORTNAME}
EXTRACT_ONLY= ${DISTNAME}${EXTRACT_SUFX}
MAINTAINER= h2+fbsdports@fsfe.org
COMMENT= Free, open-source, cross-platform bioinformatics toolkit
LICENSE= GPLv2
.if !exists(/usr/include/execinfo.h)
LIB_DEPENDS= libexecinfo.so:${PORTSDIR}/devel/libexecinfo
.endif
RUN_DEPENDS= bash:${PORTSDIR}/shells/bash
USES= qmake
USE_GL= glu
USE_QT4= gui webkit xml svg linguist_build moc_build qmake_build \
qtestlib_build rcc_build uic_build imageformats_run
USE_XORG= xtst
USE_LDCONFIG= yes
INSTALLS_ICONS= yes
QMAKE_ARGS= INSTALL_PREFIX=${PREFIX} UGENE_INSTALL_DATA=${DATADIR} \
INSTALL_MANDIR=${MAN1PREFIX}/man
ALL_TARGET= release
DOCSDIR= ${DATADIR}/manuals
PORTDOCS= QueryDesigner_UserManual.pdf UniproUGENE_UserManual.pdf \
WorkflowDesigner_UserManual.pdf
OPTIONS_DEFINE= DOCS
DOCS_DESC= Install official UGENE documentation (PDF)
.include <bsd.port.pre.mk>
.if ${OSVERSION} > 1000054
CXXFLAGS+= -std=c++11
.endif
.if ${ARCH} == "amd64"
# XXX: need to manually tell the build we are on x64
QMAKE_ARGS+= CONFIG+=x64
PLIST_SUB= NOX64="@comment "
.else
PLIST_SUB= NOX64=""
.endif
.if ${MACHINE_CPU:Msse2}
QMAKE_ARGS+= UGENE_SSE2_DETECTED=1
.endif
post-extract:
${CP} -p ${_DISTDIR}/*.pdf ${WRKSRC}/data/manuals
post-patch:
# yes, bash is required, stuff will not execute with sh
@${REINPLACE_CMD} -e 's|/bin/bash|/usr/bin/env bash|' \
${WRKSRC}/src/gen_bin_script.cmd \
${WRKSRC}/installer/_common_data/ugene
# remove BOM from files and non-latin comments; gcc 4.2 does not like them
@${REINPLACE_CMD} -e '1s|^[^/]*|| ; /lose sequence view,/d' \
${WRKSRC}/src/plugins/GUITestBase/src/tests/common_scenarios/smith_waterman_dialog/GTTestsSWDialog.cpp \
${WRKSRC}/src/plugins/GUITestBase/src/tests/common_scenarios/repeat_finder/GTTestsRepeatFinder.cpp
post-configure:
@${REINPLACE_CMD} -e '/^LFLAGS/s,-pthread,-lexecinfo &,' \
${WRKSRC}/src/ugenecl/Makefile.Release \
${WRKSRC}/src/ugeneui/Makefile.Release
.include <bsd.port.post.mk>
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