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PORTNAME= picard
DISTVERSION= 2.22.9
CATEGORIES= biology java
MASTER_SITES= http://github.com/broadinstitute/picard/releases/download/${PORTVERSION}/
PKGNAMESUFFIX= -tools
DISTNAME= ${PORTNAME}
EXTRACT_SUFX= .jar
MAINTAINER= jwb@FreeBSD.org
COMMENT= CLI tools for manipulating high-throughput sequencing (HTS) data
LICENSE= MIT
RUN_DEPENDS= samtools:biology/samtools
USE_JAVA= 1.8+
JAVA_RUN= yes
CONFLICTS_INSTALL= picard # bin/picard
SUB_FILES= picard
NO_BUILD= yes
NO_ARCH= yes
PLIST_FILES= bin/picard ${JAVAJARDIR}/picard.jar
do-extract:
# No extract
do-install:
${INSTALL_DATA} ${DISTDIR}/${DISTNAME}${EXTRACT_SUFX} \
${STAGEDIR}${JAVAJARDIR}
${INSTALL_SCRIPT} ${WRKDIR}/picard ${STAGEDIR}${PREFIX}/bin
.include <bsd.port.mk>
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