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# Created by: Johann Visagie <johann@egenetics.com>
# $FreeBSD$
PORTNAME= bioperl
PORTVERSION= 1.6.924
PORTREVISION= 1
CATEGORIES= biology perl5
MASTER_SITES= CPAN
MASTER_SITE_SUBDIR= CPAN:CJFIELDS
PKGNAMEPREFIX= p5-
DISTNAME= BioPerl-${PORTVERSION}
MAINTAINER= perl@FreeBSD.org
COMMENT= Collection of Perl modules for bioinformatics
LICENSE= ART10 GPLv1
LICENSE_COMB= dual
BUILD_DEPENDS= p5-Text-Tabs+Wrap>=0:${PORTSDIR}/textproc/p5-Text-Tabs+Wrap \
p5-Bio-ASN1-EntrezGene>=0:${PORTSDIR}/biology/p5-Bio-ASN1-EntrezGene \
p5-Class-AutoClass>=0:${PORTSDIR}/devel/p5-Class-AutoClass \
p5-Data-Stag>=0:${PORTSDIR}/devel/p5-Data-Stag \
p5-Data-Stag>=0:${PORTSDIR}/devel/p5-Data-Stag \
p5-Data-Stag>=0:${PORTSDIR}/devel/p5-Data-Stag \
p5-GD-SVG>=0:${PORTSDIR}/graphics/p5-GD-SVG \
p5-Graph>=0:${PORTSDIR}/math/p5-Graph \
p5-libwww>=0:${PORTSDIR}/www/p5-libwww \
p5-IO-stringy>=0:${PORTSDIR}/devel/p5-IO-stringy \
p5-IO-String>=0:${PORTSDIR}/devel/p5-IO-String \
p5-libwww>=0:${PORTSDIR}/www/p5-libwww \
p5-SOAP-Lite>=0:${PORTSDIR}/net/p5-SOAP-Lite \
p5-SVG>=0:${PORTSDIR}/textproc/p5-SVG \
p5-SVG-Graph>=0:${PORTSDIR}/graphics/p5-SVG-Graph \
p5-Text-Shellwords>=0:${PORTSDIR}/textproc/p5-Text-Shellwords \
p5-XML-DOM>=0:${PORTSDIR}/textproc/p5-XML-DOM \
p5-XML-DOM-XPath>=0:${PORTSDIR}/textproc/p5-XML-DOM-XPath \
p5-libxml>=0:${PORTSDIR}/textproc/p5-libxml \
p5-XML-SAX>=0:${PORTSDIR}/textproc/p5-XML-SAX \
p5-XML-SAX>=0:${PORTSDIR}/textproc/p5-XML-SAX \
p5-XML-SAX-Writer>=0:${PORTSDIR}/textproc/p5-XML-SAX-Writer \
p5-XML-Twig>=0:${PORTSDIR}/textproc/p5-XML-Twig \
p5-XML-Writer>=0:${PORTSDIR}/textproc/p5-XML-Writer \
p5-Clone>=0:${PORTSDIR}/devel/p5-Clone \
p5-DBD-mysql>=0:${PORTSDIR}/databases/p5-DBD-mysql \
p5-GD>=0:${PORTSDIR}/graphics/p5-GD \
p5-HTML-Parser>=0:${PORTSDIR}/www/p5-HTML-Parser \
p5-HTML-Parser>=0:${PORTSDIR}/www/p5-HTML-Parser \
p5-XML-Parser>=0:${PORTSDIR}/textproc/p5-XML-Parser \
p5-Spreadsheet-ParseExcel>=0:${PORTSDIR}/textproc/p5-Spreadsheet-ParseExcel \
p5-Convert-Binary-C>=0:${PORTSDIR}/converters/p5-Convert-Binary-C \
p5-Algorithm-Munkres>=0:${PORTSDIR}/math/p5-Algorithm-Munkres \
p5-Array-Compare>=0:${PORTSDIR}/misc/p5-Array-Compare \
p5-GraphViz>=0:${PORTSDIR}/graphics/p5-GraphViz \
p5-Math-Random>=0:${PORTSDIR}/math/p5-Math-Random \
p5-PostScript>=0:${PORTSDIR}/print/p5-PostScript \
p5-Set-Scalar>=0:${PORTSDIR}/devel/p5-Set-Scalar \
p5-URI>=0:${PORTSDIR}/net/p5-URI \
p5-Test-Most>=0:${PORTSDIR}/devel/p5-Test-Most \
p5-HTML-TableExtract>=2:${PORTSDIR}/www/p5-HTML-TableExtract \
p5-Sort-Naturally>=1:${PORTSDIR}/textproc/p5-Sort-Naturally \
p5-XML-Simple>=2:${PORTSDIR}/textproc/p5-XML-Simple \
p5-YAML>=0:${PORTSDIR}/textproc/p5-YAML \
p5-Error>=0:${PORTSDIR}/lang/p5-Error
RUN_DEPENDS:= ${BUILD_DEPENDS}
USES= perl5
USE_PERL5= modbuild
OPTIONS_DEFINE= DOCS PGTEST SQLITETEST
PGTEST_DESC= Test PostGreSQL
SQLITETEST_DESC= Test SQLite
PGTEST_RUN_DEPENDS= p5-DBD-Pg>=3:${PORTSDIR}/databases/p5-DBD-Pg
PGTEST_BUILD_DEPENDS= p5-DBD-Pg>=3:${PORTSDIR}/databases/p5-DBD-Pg
SQLITETEST_RUN_DEPENDS= p5-DBD-SQLite>=1:${PORTSDIR}/databases/p5-DBD-SQLite
SQLITETEST_BUILD_DEPENDS= p5-DBD-SQLite>=1:${PORTSDIR}/databases/p5-DBD-SQLite
.include <bsd.port.options.mk>
post-install:
${MKDIR} ${STAGEDIR}${DATADIR}
${CP} -R ${WRKSRC}/scripts ${WRKSRC}/models ${STAGEDIR}${DATADIR}
${MKDIR} ${STAGEDIR}${EXAMPLESDIR}
${CP} -R ${WRKSRC}/examples/* ${STAGEDIR}${EXAMPLESDIR}
.if ${PORT_OPTIONS:MDOCS}
${MKDIR} ${STAGEDIR}${DOCSDIR}
.for doc in AUTHORS BUGS Changes DEPENDENCIES DEPRECATED INSTALL LICENSE MANIFEST README
${INSTALL_MAN} ${WRKSRC}/${doc} ${STAGEDIR}${DOCSDIR}
.endfor
${CP} -R ${WRKSRC}/doc ${STAGEDIR}${DOCSDIR}
.endif
.include <bsd.port.mk>
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