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# Created by: barnhart@genetics.wustl.edu
# $FreeBSD$
PORTNAME= hmmer
PORTVERSION= 3.0
CATEGORIES= biology
MASTER_SITES= ftp://selab.janelia.org/pub/software/hmmer3/3.0/ \
http://selab.janelia.org/software/hmmer3/3.0/
MAINTAINER= ports@FreeBSD.org
COMMENT= Profile hidden Markov models for biological sequence analysis
GNU_CONFIGURE= yes
USES= perl5
CONFIGURE_ARGS+=--enable-threads --enable-lfs
DOCFILES= COPYRIGHT INSTALL LICENSE Userguide.pdf
EXAMPLES= 7LESS_DROME Pkinase.sto fn3.sto globins4.sto minifam.h3f minifam.h3p \
HBB_HUMAN fn3.hmm globins4.hmm globins45.fa minifam.h3i \
Pkinase.hmm fn3.out globins4.out minifam minifam.h3m
#MAN1= hmmalign.1 hmmbuild.1 hmmcalibrate.1 hmmconvert.1 hmmemit.1 \
# hmmer.1 hmmfetch.1 hmmindex.1 hmmpfam.1 hmmsearch.1
OPTIONS_DEFINE= PVM
PVM_DESC= PVM support
.include <bsd.port.options.mk>
.if ${PORT_OPTIONS:MPVM}
CONFIGURE_ENV+= PVM_ROOT="${LOCALBASE}/lib/pvm" PVM_ARCH="FREEBSD"
CONFIGURE_ARGS+= --with-pvm
BUILD_DEPENDS+= pvm:${PORTSDIR}/net/pvm
.endif
post-install:
.if ${PORT_OPTIONS:MDOCS}
@ ${MKDIR} ${DOCSDIR}
.for docfile in ${DOCFILES}
@ ${INSTALL_DATA} ${WRKSRC}/${docfile} ${DOCSDIR}
.endfor
.endif
.if ${PORT_OPTIONS:MEXAMPLES}
@ ${MKDIR} ${EXAMPLESDIR}
.for example in ${EXAMPLES}
@ ${INSTALL_DATA} ${WRKSRC}/tutorial/${example} ${EXAMPLESDIR}
.endfor
.endif
.if !defined(BATCH)
@ ${CAT} ${PKGMESSAGE}
.endif
.include <bsd.port.mk>
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