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# Created by: Bob Zimmermann <rpz@cse.wustl.edu>
PORTNAME= gmap
PORTVERSION= 2020.09.12
CATEGORIES= biology
MASTER_SITES= http://research-pub.gene.com/gmap/src/
DISTNAME= ${PORTNAME}-gsnap-${PORTVERSION:C|\.|-|g}
MAINTAINER= jwb@FreeBSD.org
COMMENT= Genomic Mapping and Alignment Program for mRNA and EST Sequences
LICENSE= GMAP
LICENSE_NAME= GMAP License
LICENSE_FILE= ${WRKSRC}/COPYING
LICENSE_PERMS= dist-mirror pkg-mirror auto-accept
ONLY_FOR_ARCHS= amd64 i386 powerpc64le
ONLY_FOR_ARCHS_REASON= upstream supports only x86 and possibly POWER8
USES= gmake perl5
GNU_CONFIGURE= yes
CONFLICTS_INSTALL= cpuid scotch # bin/cpuid bin/gmap
WRKSRC= ${WRKDIR}/${PORTNAME}-${PORTVERSION:C|\.|-|g}
CFLAGS+= -fcommon
OPTIONS_DEFINE= SIMD
SIMD_CONFIGURE_OFF= --disable-builtin-popcount --disable-simd
.include <bsd.port.mk>
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