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# Created by: Johann Visagie <johann@egenetics.com>
# $FreeBSD$
PORTNAME= fasta3
PORTVERSION= 36.3.6
CATEGORIES= biology
MASTER_SITES= http://faculty.virginia.edu/wrpearson/fasta/fasta36/
DISTNAME= fasta-${PORTVERSION}
MAINTAINER= ports@FreeBSD.org
COMMENT= Collection of programs for searching DNA and protein databases
NO_CDROM= May not be sold or incorporated into a commercial product
WRKSRC= ${WRKDIR}/${DISTNAME}
BUILD_WRKSRC= ${WRKSRC}/src
INSTALL_WRKSRC= ${BUILD_WRKSRC}
SUB_FILES= pkg-message
MAKEFILE= Makefile.freebsd
XDIR= ${PREFIX}/bin
FASTA_HOST!= /usr/bin/uname -n
MAKE_ENV+= THR_LIBS=${PTHREAD_LIBS} XDIR=${XDIR} \
FASTA_HOST='"${FASTA_HOST}"'
FASTA3_DOCS= README.versions \
fasta_func.doc readme.* fasta.defaults \
fasta.options fasta_versions.html changes*.html
DATA= data/*.mat
EXAMPLES= seq/*.aa seq/*.lc seq/*.seq seq/*.lib
MAN1= fasta36.1 fastf3.1 fasts3.1 prss3.1 map_db.1 ps_lav.1
MLINKS= fasta36.1 tfasta35.1 fasta36.1 fastx35.1 fasta36.1 tfastx35.1 \
fasta36.1 fasty35.1 fasta36.1 tfasty35.1 fasta36.1 ssearch35.1 \
fasta36.1 fastf35.1 fasta36.1 fasts35.1 fasta36.1 tfasts35.1 \
fasta36.1 fastm35.1 fasta36.1 tfastf35.1 fasta36.1 ggsearch35.1 \
fasta36.1 lalign35.1 fasta36.1 prss35.1 fasta36.1 prfx35.1
PLIST_SUB= VER=${PORTVERSION:R:R}
NO_STAGE= yes
post-patch:
@ ${CP} ${WRKSRC}/make/${MAKEFILE} ${BUILD_WRKSRC}/
post-install:
${INSTALL_PROGRAM} ${WRKSRC}/bin/* ${PREFIX}/bin/
${INSTALL_DATA} ${WRKSRC}/conf/fastlibs ${PREFIX}/etc/fastlibs.sample
@ ${MKDIR} ${DATADIR}
.for data in ${DATA}
${INSTALL_DATA} ${WRKSRC}/${data} ${DATADIR}
.endfor
@ ${MKDIR} ${EXAMPLESDIR}
.for ex in ${EXAMPLES}
${INSTALL_DATA} ${WRKSRC}/${ex} ${EXAMPLESDIR}
.endfor
.for manpage in ${MAN1}
${INSTALL_MAN} ${WRKSRC}/doc/${manpage} ${MAN1PREFIX}/man/man1/
.endfor
.if !defined(NOPORTDOCS)
@ ${MKDIR} ${DOCSDIR}
${INSTALL_DATA} ${WRKSRC}/README ${DOCSDIR}
${INSTALL_DATA} ${WRKSRC}/COPYRIGHT ${DOCSDIR}
${INSTALL_DATA} ${WRKSRC}/FASTA_LIST ${DOCSDIR}
.for docfile in ${FASTA3_DOCS}
@ ${INSTALL_DATA} ${WRKSRC}/doc/${docfile} ${DOCSDIR}
.endfor
.endif
@ ${CAT} ${PKGMESSAGE}
.include <bsd.port.mk>
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