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# Created by: Fernan Aguero <fernan@iib.unsam.edu.ar>
# $FreeBSD$
PORTNAME= blat
PORTVERSION= 34
CATEGORIES= biology
MASTER_SITES= http://www.soe.ucsc.edu/~kent/src/
DISTNAME= ${PORTNAME}Src${PORTVERSION}
MAINTAINER= ports@FreeBSD.org
COMMENT= Fast tool for local sequence similarity searches
USES= gmake
EXTRACT_SUFX= .zip
MAKEFILE= makefile
WRKSRC= ${WRKDIR}/${PORTNAME}Src
MAKE_ENV+= HOME="${WRKSRC}/${BINDIR}" MACHTYPE="${ARCH}"
SUB_FILES= pkg-message
EXECUTABLES= blat faToNib faToTwoBit gfClient gfServer nibFrag \
pslPretty pslReps pslSort twoBitInfo twoBitToFa
PLIST_FILES+= ${EXECUTABLES:S,^,bin/,}
PORTDOCS= README
PORTDATA= *
OPTIONS_DEFINE= DOCS
post-patch:
@${MKDIR} ${WRKSRC}/bin/${ARCH}
@${MKDIR} ${WRKSRC}/lib/${ARCH}
@${REINPLACE_CMD} -E 's,^(CC|CFLAGS)=,\1 ?=,g;s,-Werror,,g' \
${WRKSRC}/inc/common.mk
do-install:
.for exe in ${EXECUTABLES}
${INSTALL_PROGRAM} ${WRKSRC}/bin/${ARCH}/${exe} ${STAGEDIR}${PREFIX}/bin
.endfor
@${MKDIR} ${STAGEDIR}${DATADIR}/webBlat
${INSTALL_PROGRAM} ${WRKSRC}/webBlat/webBlat ${STAGEDIR}${DATADIR}/webBlat
${INSTALL_DATA} ${WRKSRC}/webBlat/install.txt ${STAGEDIR}${DATADIR}/webBlat
@${MKDIR} ${STAGEDIR}${DOCSDIR}
${INSTALL_DATA} ${WRKSRC}/README ${STAGEDIR}${DOCSDIR}
.include <bsd.port.mk>
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