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2022-12-08biology/libcombine: Update 0.2.19 -> 0.2.20Yuri Victorovich
2022-12-06biology/py-pyrodigal: New port: Python binding for Prodigal, an ORF finder fo...Yuri Victorovich
2022-12-06Revert: "all: deprecate ports depending on expired security/py-keyrings.alt"Rene Ladan
2022-12-05biology/py-biopython: Update to 1.80Wen Heping
2022-12-02biology/metaeuk: Broken on systems where OpenMP isn't enabledYuri Victorovich
2022-12-01biology/metaeuk: append missing bracketPiotr Kubaj
2022-12-01biology/metaeuk: fix build without libomp and disable -m{arch,cpu}=nativePiotr Kubaj
2022-11-29biology/taxonkit: Update 0.13.0 -> 0.14.0Yuri Victorovich
2022-11-27*/*: bump PORTREVISION after the upgrade of math/suitesparse*Thierry Thomas
2022-11-26biology/gatk: Update 4.2.6.1 -> 4.3.0.0Yuri Victorovich
2022-11-26biology/cytoscape: Fix buildYuri Victorovich
2022-11-26biology/metaeuk: New port: Gene discovery and annotation for large-scale euka...Yuri Victorovich
2022-11-25biology/augustus: New port: Genome annotation toolYuri Victorovich
2022-11-24biology/barrnap: Update descrYuri Victorovich
2022-11-24biology/barrnap: New port: BAsic Rapid Ribosomal RNA PredictorYuri Victorovich
2022-11-24biology/cytoscape: Unbreak by re-adding and using maven-3.6.3Yuri Victorovich
2022-11-24biology/megahit: Add cmake patch to respect ports build flagsJason W. Bacon
2022-11-22biology/megahit: Ultra-fast single-node metagenomics assemblyJason W. Bacon
2022-11-17graphics/proj: Update to 9.1.0Loïc Bartoletti
2022-11-12biology/paml: Update to 4.10.6Joseph Mingrone
2022-11-10biology/py-pysam: Update 0.19.1 -> 0.20.0Yuri Victorovich
2022-11-09biology/bowtie2: fix build on powerpc64*Piotr Kubaj
2022-11-04biology/bowtie2: Update to 2.5.0Jason W. Bacon
2022-10-26biology/biosig: Make sure __LITTLE_ENDIAN is defined in include files.Stephen Montgomery-Smith
2022-10-22*/*: Bump PORTREVISION for consumers of libunistringDaniel Engberg
2022-10-21biology/libcombine: New port: C++ library for working with the COMBINE archiv...Yuri Victorovich
2022-10-12biology/tRNAscan-SE: Update to 2.0.11Motomichi Matsuzaki
2022-10-12biology/infernal: Update to 1.1.4Motomichi Matsuzaki
2022-10-11biology/jalview: Update 2.11.1.4 -> 2.11.2.5Yuri Victorovich
2022-10-11biology/hmmer: Update to 3.3.2Jason W. Bacon
2022-10-10biology/biosoup: Update g20201216 -> 0.10.0-2Yuri Victorovich
2022-10-09biology/biosig: Update 2.4.2 -> 2.4.3Yuri Victorovich
2022-10-06all: Bump PORTREVISION after lang/go{118,119} updateDmitri Goutnik
2022-10-03biology/py-valerius: New port: Python bioinformatics toolsYuri Victorovich
2022-10-03biology/rubygem-bio: Update to 2.0.4Po-Chuan Hsieh
2022-10-03devel/grpc: Update to 1.49.0Po-Chuan Hsieh
2022-10-01biology/hyphy: Not broken on systems where OpenMP isn't availableYuri Victorovich
2022-10-01biology/hyphy: Add tests; Fix ONLY_FOR_ARCHS orderYuri Victorovich
2022-10-01biology/hhsuite: Disable on 32-bit architectures following upstream adviceYuri Victorovich
2022-10-01biology/hhsuite: fix build on armv7Robert Clausecker
2022-09-30all: deprecate ports depending on expired security/py-keyrings.altRene Ladan
2022-09-26biology/py-PySCeS: Update 1.0.2 -> 1.0.3Yuri Victorovich
2022-09-24biology/seqkit: Update 2.3.0 -> 2.3.1Yuri Victorovich
2022-09-24biology/taxonkit: Update 0.12.0 -> 0.13.0Yuri Victorovich
2022-09-24biology/py-mrcfile: Update 1.4.2 -> 1.4.3Yuri Victorovich
2022-09-21biology/vsearch: Update to 2.22.1Jason W. Bacon
2022-09-19biology/hyphy: Update to 2.5.42Joseph Mingrone
2022-09-16biology/vsearch: Update to 2.21.2Jason W. Bacon
2022-09-11Mk/Uses: always use colon for build/run suffixFelix Palmen
2022-09-09biology/hhsuite: Broken on armv7Yuri Victorovich
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