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AgeCommit message (Expand)Author
2018-12-11biology/mummer: Add USES=compiler:c++11-langYuri Victorovich
2018-12-11biology/mummer: Update 3.23 -> 4.0.0beta2-2Yuri Victorovich
2018-12-11biology/mummer: Take maintainershipYuri Victorovich
2018-12-07New port: math/checkm: Quality assessment tool for the microbial genomesYuri Victorovich
2018-12-07New port: math/groopm: Metagenomic binning suiteYuri Victorovich
2018-12-04devel/gradle: Update to 5.0Yuri Victorovich
2018-12-03biology/gatk: Change gradle4->gradle because it builds fine with both gradle ...Yuri Victorovich
2018-12-03biology/gatk: Correct the targetYuri Victorovich
2018-12-03New port: biology/gatk: Variant discovery in high-throughput sequencing dataYuri Victorovich
2018-12-02Mark QT4 ports/functionality for removal on 2019-03-15Rene Ladan
2018-11-18biology/igv: Update 2.4.15 -> 2.4.16Yuri Victorovich
2018-11-13biology/molden: update to 5.8.2Johannes M Dieterich
2018-11-09biology/seqan-apps: fix build with GCC-based architecturesSteve Wills
2018-11-07biology/molden: Unbreak: fix the problem that it can't find libgcc_s.so from gccYuri Victorovich
2018-11-05Fix build failure with base GCC because of double typedefs.Mark Linimon
2018-11-05Remove the incorrect typedefs to fix build on tier-2.Mark Linimon
2018-11-05Remove the inccorrect typedefs to fix build on tier-2.Mark Linimon
2018-11-04biology/igv: Update 2.4.10 -> 2.4.15Yuri Victorovich
2018-11-04biology/canu: Upgrade to 1.8, add experimental SLURM integrationJason W. Bacon
2018-11-03biology/bowtie: Patch for gcc8 and clean upJason W. Bacon
2018-11-03biology/bowtie: Revert previous commit with missing log messageJason W. Bacon
2018-11-03biology/bowtie: PatchJason W. Bacon
2018-10-30biology/py-loompy: Update 2.0.15 -> 2.0.16Yuri Victorovich
2018-10-28biology/iqtree: Update to version 1.6.8Joseph Mingrone
2018-10-28Fix build with tier-2 arches.Mark Linimon
2018-10-28biology/py-pyfaidx: Update 0.5.5.1 -> 0.5.5.2Yuri Victorovich
2018-10-23biology/p5-transdecoder: Upgrade to 5.4.0Jason W. Bacon
2018-10-20biology/hyphy: Update to version 2.3.14.16Joseph Mingrone
2018-10-19biology/py-loompy: Update 2.0.14 -> 2.0.15Yuri Victorovich
2018-10-19New port: biology/py-gffutils: Work with GFF and GTF files in a flexible data...Yuri Victorovich
2018-10-19New port: biology/py-pyfaidx: Efficient pythonic random access to fasta subse...Yuri Victorovich
2018-10-19New port: biology/py-gtfparse: Parsing tools for GTF (gene transfer format) f...Yuri Victorovich
2018-10-18biology/ngs-sdk: Update 2.9.2 -> 2.9.3Yuri Victorovich
2018-10-17biology/py-orange3-single-cell: Update 0.8.1 -> 0.8.2Yuri Victorovich
2018-10-16biology/iqtree: Update to version 1.6.7.1Joseph Mingrone
2018-10-14biology/py-orange3-single-cell: Update 0.8.0 -> 0.8.1Yuri Victorovich
2018-10-14biology/py-orange3-bioinformatics: Update 3.2.0 -> 3.2.2Yuri Victorovich
2018-10-12Deprecate most glib12 consumersAntoine Brodin
2018-10-11Update devel/tbb to version 2019.1 and bump dependent ports' revisionsGanael LAPLANCHE
2018-10-10Update to 1.73Sunpoet Po-Chuan Hsieh
2018-10-08New port: biology/ncbi-cxx-toolkit: NCBI C++ ToolkitYuri Victorovich
2018-10-07biology/ncbi-toolkit: Update 2012.06.20 -> 2017.01.06Yuri Victorovich
2018-10-07biology/tinker: Update 7.1.3 -> 8.4.4; Move to science/Yuri Victorovich
2018-10-06biology/py-biom-format: Update to version 2.1.7Joseph Mingrone
2018-10-06Fix every instance of RUN_DEPENDS:=${BUILD_DEPENDS} in p5 ports, exceptDag-Erling Smørgrav
2018-10-04Update devel/tbb to version 2019 and bump dependent port's revisionsGanael LAPLANCHE
2018-09-28- Update to 1-14-10Danilo Egea Gondolfo
2018-09-28- Unbreak by adding missing pkg-plistWen Heping
2018-09-27Allow building on powerpc64.Mark Linimon
2018-09-26Update Objective-C LLVM version to 6.0.Brooks Davis
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