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AgeCommit message (Expand)Author
2021-01-30biology/bowtie2: Reverse switch to devel/onetbbJason W. Bacon
2021-01-30biology/bowtie2: Switch to devel/onetbbJason W. Bacon
2021-01-30biology/vsearch: Update to 2.15.2Jason W. Bacon
2021-01-30Update USES=python: math/py-pandas 1.2.0 requires Python 3.7+Sunpoet Po-Chuan Hsieh
2021-01-27biology/hyphy: Update to version 2.5.27Joseph Mingrone
2021-01-26biology/kallisto: Add -lz for pending hdf5 upgradeJason W. Bacon
2021-01-24biology/bedtools: Upgrade to 2.30.0Jason W. Bacon
2021-01-23biology/haplohseq: Fix example scripts for python 3Jason W. Bacon
2021-01-22biology/bedtools: License changed upstreamJason W. Bacon
2021-01-22biology/gatk: Add the WITH_LARGE_FILES option.Yuri Victorovich
2021-01-21biology/gatk: Update 4.1.8.1 -> 4.1.9.0Yuri Victorovich
2021-01-20Fix build on GCC-based systems by adding compiler:c++14-lang to USES:Mark Linimon
2021-01-20Add compiler:c++11-lang to USES to fix build on GCC-based systems:Mark Linimon
2021-01-19biology/bioparser: Cosmetic changesYuri Victorovich
2021-01-19New port: biology/rampler: Standalone module for sampling genomic sequencesYuri Victorovich
2021-01-19New port: biology/edlib: Fast C++ library for sequence alignment using edit d...Yuri Victorovich
2021-01-19New port: biology/spoa: C++ implementation of the partial order alignment (PO...Yuri Victorovich
2021-01-19New port: biology/biosoup: Collection of C++ header-only data structures for ...Yuri Victorovich
2021-01-19New port: biology/bioparser: C++ header only parsing library for several form...Yuri Victorovich
2021-01-19Mark BROKEN on riscv64 the same as on aarch64.Mark Linimon
2021-01-19Mark BROKEN on riscv64 the same as armv*:Mark Linimon
2021-01-16biology/vsearch: enable on powerpc64lePiotr Kubaj
2021-01-15biology/hyphy: Update to version 2.5.26Joseph Mingrone
2021-01-15biology/haplohseq: Restrict to python3Jason W. Bacon
2021-01-14Hook haplohseq to the buildAntoine Brodin
2021-01-14biology/haplohseq: Resurrect and fix python2 dependencyJason W. Bacon
2021-01-14Remove PY_SPHINX from ports using Python 3Danilo G. Baio
2021-01-12biology/iqtree: Remove USES=compiler:openmp, fix amd64 clang++ buildJoseph Mingrone
2021-01-11biology/hyphy: Remove USES=compiler:openmpJoseph Mingrone
2021-01-11biology/star: Drop dependency on gccJason W. Bacon
2021-01-11biology/stacks: Drop dependency on gccJason W. Bacon
2021-01-11biology/ncbi-blast+: Drop dependency on gccJason W. Bacon
2021-01-11biology/gcta: Drop dependency on gccJason W. Bacon
2021-01-11biology/fasttree: Drop dependency on gccJason W. Bacon
2021-01-11biology/cd-hit: Drop dependency on gccJason W. Bacon
2021-01-11biology/canu: Drop dependency on gccJason W. Bacon
2021-01-11biology/py-biom-format: Update to version 2.1.10Joseph Mingrone
2021-01-11biology/hyphy: Update to version 2.5.25Joseph Mingrone
2021-01-08biology/pooler: Upgrade to 1.76Jason W. Bacon
2021-01-02biology/gemma: Upgrade to 0.98.3Jason W. Bacon
2021-01-02For ports on riscv64 that fail the same (or similar ways) to aarch64, markMark Linimon
2020-12-31- Update Unipro UGENE port to version 37.0Alexey Dokuchaev
2020-12-28Drop python 2.7 support from a few portsAntoine Brodin
2020-12-26Restrict to Java 8, since this doesn't compile with Java 11Greg Lewis
2020-12-24scipy 1.5.4 is only compatible with python 3.6+Antoine Brodin
2020-12-20biology/hyphy: Update to version 2.5.24Joseph Mingrone
2020-12-20biology/diamond: Update to version 2.0.6Joseph Mingrone
2020-12-20Set CMAKE options explicitlySunpoet Po-Chuan Hsieh
2020-12-19Add EXPAT, LIBXML and XERCES optionsSunpoet Po-Chuan Hsieh
2020-12-17biology/ngs-sdk: Update 2.10.5 -> 2.10.9Yuri Victorovich
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