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AgeCommit message (Expand)Author
2020-09-08biology/gatk: Fix buildYuri Victorovich
2020-09-07biology/viennarna: Update 2.4.14 -> 2.4.15Yuri Victorovich
2020-09-06biology/gatk: Update 4.1.8.0 -> 4.1.8.1Yuri Victorovich
2020-09-04biology/mapm3: Reformat patches.Fernando Apesteguía
2020-09-04biology/mapm3: Fix build with llvm11, gcc10Fernando Apesteguía
2020-09-02biology/hyphy: Update to version 2.5.18 and add AVX optionJoseph Mingrone
2020-09-02biology/py-ete3: Update 3.1.1 -> 3.1.2Yuri Victorovich
2020-08-30biology/diamond: Update to version 2.0.4Joseph Mingrone
2020-08-30biology/picard-tools: Remove extraneous fileJason W. Bacon
2020-08-30Extend expiration of ports broken with -fno-commonNiclas Zeising
2020-08-30Chase security/p11-kit updateRoman Bogorodskiy
2020-08-29biology/: Fix build with clang11 and deprecate ports@ portsTobias C. Berner
2020-08-29biology/phyml: fix build on recent currentTobias C. Berner
2020-08-28biology/cufflinks: fix build on recent currentTobias C. Berner
2020-08-28biology/bwa: fix build on recent currentTobias C. Berner
2020-08-27Remove expired ports:Rene Ladan
2020-08-27biology/hhsuite: Update 3.2.0 -> 3.3.0Yuri Victorovich
2020-08-20biology/paml: fix the build with LLVM 11Kyle Evans
2020-08-20biology/hyphy: Update to version 2.5.17Joseph Mingrone
2020-08-15devel/ipython: Update to 7.17.0Danilo G. Baio
2020-08-15Remove deprecated ports:Rene Ladan
2020-08-14biology/graphlan: Remove the 2.7 limitation on python because it's no longer ...Yuri Victorovich
2020-08-13biology/groopm: Remove python's 2.7 restriction placed here by mistakeYuri Victorovich
2020-08-07biology/diamond: Update to version 2.0.2Joseph Mingrone
2020-08-07biology/py-gtfparse: Update 1.2.0 -> 1.2.1Yuri Victorovich
2020-08-03biology/samtools: Upgrade to 1.10Jason W. Bacon
2020-08-03biology/bcftools: Upgrade to 1.10.2Jason W. Bacon
2020-08-03biology/vt: Patch to work with htslib 1.10.2Jason W. Bacon
2020-08-03biology/htslib: Upgrade to 1.10.2Jason W. Bacon
2020-08-03biology/kallisto: Revert to 0.46.1Jason W. Bacon
2020-07-28biology/diamond: Update to version 2.0.0Joseph Mingrone
2020-07-26Deprecate ports broken for more than 6 monthsAntoine Brodin
2020-07-24Update to 2.0.1Sunpoet Po-Chuan Hsieh
2020-07-24Add rubygem-bio-shell 1.0.0Sunpoet Po-Chuan Hsieh
2020-07-24Add rubygem-bio-old-biofetch-emulator 1.0.0Sunpoet Po-Chuan Hsieh
2020-07-24Add rubygem-bio-executables 1.0.0Sunpoet Po-Chuan Hsieh
2020-07-17Update devel/tbb to 2020.3 and bump dependent ports' revisionsGanael LAPLANCHE
2020-07-14Unbreak bulk -aAntoine Brodin
2020-07-10biology/phyml: update to 3.3.20200621Fernando Apesteguía
2020-07-09biology/gatk: Update 4.1.7.0 -> 4.1.8.0Yuri Victorovich
2020-07-08biology/cufflinks: fix build on GCC architecturesPiotr Kubaj
2020-07-04Chanse update of devel/libffiNiclas Zeising
2020-07-04biology/psi88: Unbreak build with GCC 10Tobias Kortkamp
2020-07-04biology/bowtie: Unbreak build with GCC 10Tobias Kortkamp
2020-07-03biology/diamond: Update to version 0.9.36Joseph Mingrone
2020-06-30Bump devel/jsoncpp consumers after r540853.Tobias C. Berner
2020-06-28biology/hyphy: Update to version 2.5.15Joseph Mingrone
2020-06-27biology/diamond: Update to version 0.9.35Joseph Mingrone
2020-06-26Move devel/p5-IO-stringy to devel/p5-IO-Stringy and update to 2.113Sunpoet Po-Chuan Hsieh
2020-06-26biology/py-bx-python: Update 0.8.8 -> 0.8.9Yuri Victorovich
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