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AgeCommit message (Expand)Author
2018-04-01- Update to 1.61Wen Heping
2018-03-31biology/stacks: Software pipeline for building loci from short-read sequencesJason W. Bacon
2018-03-29biology/libgtextutils: Unbreak for FreeBSD 12Jason W. Bacon
2018-03-28biology/bamtools: API and toolkit for handling BAM filesJason W. Bacon
2018-03-27biology/ncbi-blast+: Upgrade to 2.7.1Jason W. Bacon
2018-03-23biology/iqtree: Update to version 1.6.3Joseph Mingrone
2018-03-21biology/py-pysam: Update to 0.14.1Yuri Victorovich
2018-03-18Mark broken on armvX and mips.Mark Linimon
2018-03-18Mark the latest version broken on armvX. Note: 2.1.8.3 built ok.Mark Linimon
2018-03-17biology/diamond: Update to version 0.9.19Joseph Mingrone
2018-03-15biology/diamond: Update to version 0.9.18-49Joseph Mingrone
2018-03-11Return maho@'s ports to the pool after his commit bit expired.Rene Ladan
2018-03-10Remove now-useless, commented-out lines.Mark Linimon
2018-03-10Bump PORTREVISIONs of all users of math/mpc that we just updated toGerald Pfeifer
2018-03-10biology/seqan-apps, biology/seqan: Update to 2.4.0Yuri Victorovich
2018-03-03biology/iqtree: Update to version 1.6.2Joseph Mingrone
2018-02-19Reduce dependency on the python2 metaportAntoine Brodin
2018-02-10biology/py-pysam: Update to 0.14Yuri Victorovich
2018-02-10biology/py-bx-python: Update to 0.8.1Yuri Victorovich
2018-02-08Canonicalize PyPi WWWs:Dmitry Marakasov
2018-02-01biology/diamond: Update to version 0.9.17Joseph Mingrone
2018-02-01- Update to 3.3.20180129Wen Heping
2018-01-31Multiple ports:Jason W. Bacon
2018-01-18devel/boost-*: update to 1.66.0Jan Beich
2018-01-11- Convert to option helper install target (add OPTIONS_DEFINE=DOCSAlexey Dokuchaev
2018-01-06Update Qt5 ports to 5.9.3.Raphael Kubo da Costa
2018-01-05biology/seaview: Update version 4.6.2=>4.6.3Muhammad Moinur Rahman
2018-01-02New USES=eigenTobias C. Berner
2018-01-01- Update to 3.697Wen Heping
2018-01-01- Update to 5.16.0Wen Heping
2017-12-29biology/iqtree: Fix distinfo after upstream re-released v1.6.1Joseph Mingrone
2017-12-28biology/iqtree: Update to version 1.6.1Joseph Mingrone
2017-12-27Disable the extra flag "-march=native" on arm to fix builds.Mark Linimon
2017-12-26Update to 2.0.1Sunpoet Po-Chuan Hsieh
2017-12-22biology/canu: Replace += with = for dependsJason W. Bacon
2017-12-22- Fix build on 11+Dmitry Marakasov
2017-12-22[new port] biology/canu: Single molecule sequence assemblerJason W. Bacon
2017-12-21Try to bring some consistency to ports that have x86-specific pieces.Mark Linimon
2017-12-20Switch from swig 2.0 to swig 3.0Baptiste Daroussin
2017-12-19Mark more recently failing ports broken on aarch64.Mark Linimon
2017-12-18Back out previous commits by jbeich demand.Mark Linimon
2017-12-18Bah. Remove spare line from cut-and-paste.Mark Linimon
2017-12-18Attempt to fix build on non-x86 archs. Untested, but does no harmMark Linimon
2017-12-13biology/diamond: Update to version 0.9.14Joseph Mingrone
2017-12-12biology/seqtools: re-try on powerpc* after r449590Jan Beich
2017-12-11- Those ports fail to build with python3Antoine Brodin
2017-12-11Mark several ports newly broken on arm.Mark Linimon
2017-12-10biology/py-biom-format: Add required dependency on math/py-pandas and doJoseph Mingrone
2017-12-09[new port] biology/p5-TrimGalore: Wrapper around Cutadapt and FastQC for adap...Jason W. Bacon
2017-12-09These are also broken on aarch64 in the same way as armv6/7.Mark Linimon
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