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2001-03-13- Upgrade to version 1.70Kevin Lo
- Update WWW PR: 25772 Submitted by: maintainer
2001-03-13Upgrade to 0.4.Jun Kuriyama
Submitted by: Ryo MIYAMOTO <rmiya@cc.hirosaki-u.ac.jp> (maintainer) PR: ports/25741
2001-03-12o update to 2.7.2.FUJISHIMA Satsuki
o pass maintainership to ports@. PR: 25685 Submitted by: maintainer
2001-03-12pass maintainership to ports@.FUJISHIMA Satsuki
PR: 25685 Submitted by: maintainer
2001-03-12Update to lastest versionKevin Lo
PR: 25726 Submitted by: maintainer
2001-03-12Update the EMBOSS suite to v1.11.0Neil Blakey-Milner
PR: 25728 Submitted by: johann@egenetics.com
2001-03-12- A small bugfix lead to a rerelease without a version number change.Neil Blakey-Milner
- Bumped PORTREVISION. Submitted by: Johann Visagie <johann@egenetics.com> PR: 25725
2001-03-12Update to 0.85.Trevor Johnson
2001-03-12Force -O0 on the Alpha.Trevor Johnson
Submitted by: steve
2001-03-09fix WWW:FUJISHIMA Satsuki
PR: 25625 Submitted by: maintainer
2001-03-08update to 33.t08.d2.FUJISHIMA Satsuki
PR: 25609 Submitted by: maintainer
2001-03-05gd.2, not gd.1Ying-Chieh Liao
Submitted by: bento
2001-03-04Change MASTER_SITE and FTP/WWW lines: caos.kun.nl is cmbi.kun.nl now.Peter Pentchev
PR: 25422 Submitted by: Marc van Woerkom <marc.vanwoerkom@science-factory.com>
2001-03-01Remove do-configure section, use PERL_CONFIGURE now.Vanilla I. Shu
2001-02-28Update to version 1.10.1Kevin Lo
PR: 25449 Submitted by: maintainer
2001-02-28reimport biology/genpakYing-Chieh Liao
2001-02-28module name conflict with print/gp, so remove it and I'll reimport it againYing-Chieh Liao
2001-02-27add gpYing-Chieh Liao
GP is a set of small utilities to manipulate DNA sequences
2001-02-20Update to version 1.10.0Kevin Lo
PR: 25228 Submitted by: MAINTAINER
2001-02-19The author (at my request) has gone back to a more FreeBSD-friendlyTrevor Johnson
way of naming the distfile. Change the port accordingly.
2001-02-19Update to 0.84.Trevor Johnson
2001-02-19Update to version 2001-02-06James E. Housley
PR: 25200 Submitted by: Johann Visagie <johann@egenetics.com>
2001-02-12Chase graphics/gd's shlib version bump.Akinori MUSHA
2001-02-11- New port: biology/fasta3, which comprises the FASTA3 suite of DNA andJames E. Housley
protein sequence search programs - FASTA3 updates only some of the elements of FASTA2, which is why I have submitted ports of both versions (as biology/fasta and biology/fasta3) PR: 24716 Submitted by: Johann Visagie <johann@egenetics.com>
2001-02-11New port: biology/fasta, the FASTA2 suite of DNA and protein sequenceJames E. Housley
search tools PR: 24715 Submitted by: Johann Visagie <johann@egenetics.com>
2001-02-10add gaussian98, an ab-initio molecular orbital calculation program.FUJISHIMA Satsuki
PR: 23577 Submitted by: NAKATA, Maho <chat95@mbox.kyoto-inet.or.jp>
2001-02-08Update to 0.84a. Generate the plist.Trevor Johnson
2001-01-29- Update EMBOSS (biology/emboss) from 1.9.0 to 1.9.1Kevin Lo
- Update the EMBASSY package EMNU from 1.0.2 to 1.0.3 - Merged the four pkg-plist* files into one PR: 24717 Submitted by: MAINTAINER
2001-01-24update from 3.7 to 3.8Ying-Chieh Liao
PR: 24371 Submitted by: MAINTAINER
2001-01-24Upgrade to version 1.9.0Kevin Lo
PR: 24597 Submitted by: MAINTAINER
2001-01-16Massive style enforcement - use ^I instead of spaces for variables identation.Maxim Sobolev
2001-01-07Clean up inefficient perl invocations; use multiple REs in the same call.Will Andrews
2000-12-22Update to 1.2.6Kevin Lo
PR: 23756 Submitted by: Ports Fury
2000-12-18Remove trailing period and package name from the pkg-comment.Dmitry Sivachenko
2000-12-11Update to version 5.79.Steve Price
PR: 23345 Submitted by: Jeremy Shaffner <jeremy@external.org>
2000-12-04Update distfiles' checksums after the distfiles have been rerolled yetPeter Pentchev
again without changing names or versions. Also add a new MASTER_SITE. PR: 23262 Submitted by: Johann Visagie <johann@egenetics.com>
2000-11-30Distfile tarballs were rerolled without notice due to a minor bug.Peter Pentchev
PR: 23193 Submitted by: Johann Visagie <johann@egenetics.com>
2000-11-28- Update port biology/emboss from 1.7.0 to 1.8.0James E. Housley
PR: 23130 Submitted by: Johann Visagie <johann@egenetics.com> MAINTAINER
2000-11-19Make nolonger support :U. Fix to compensate for that.James E. Housley
Submitted by: fenner Approved by: MAINTAINER
2000-11-15They made changes to the "blast" program.James E. Housley
Submitted by: MAINTAINER
2000-11-13- This is a fairly extensive rework of this port.James E. Housley
- "EMBASSY" applications are third party tools which have been adapted to function as part of EMBOSS, but which are not included with the base EMBOSS distribution for licensing or other reasons. This new version of the EMBOSS port now contains the three current EMBASSY applications as well, and during installation the user is presented with a dialog(1) menu to PR: 22818 Submitted by: Johann Visagie <johann@egenetics.com> MAINTAINER
2000-11-13- This is a fairly extensive rework of this port.James E. Housley
- "EMBASSY" applications are third party tools which have been adapted to function as part of EMBOSS, but which are not included with the base EMBOSS distribution for licensing or other reasons. This new version of the EMBOSS port now contains the three current EMBASSY applications as well, and during installation the user is presented with a dialog(1) menu to choose which of these should be isntalled. PR: 22818 Submitted by: Johann Visagie <johann@egenetics.com> MAINTAINER
2000-11-07Change motif to a normal dependency. REQUIRES_MOTIF is now calledSatoshi Asami
USE_MOTIF and generates a LIB_DEPENDS to x11-toolkits/open-motif. As before, it implies USE_XPM (and therefore USE_XLIB). Motif-dummy is removed from PKG_IGNORE_DEPENDS, whose sole resident is now XFree86-3. Most of the simple ".if defined(HAVE_MOTIF)"s are removed to always have USE_MOTIF. ftp/moxftp will define USE_MOTIF unless WANT_ATHENA_VERSION (new variable) is defined. I merged the X cases in cad/mars, so USE_MOTIF is used iff WITHOUT_X11 is not defined. I will remove x11-toolkits/Motif-dummy (which has been repo copied to open-motif) in a few days.
2000-11-03Yes. They did re-roll this version, it is legit.James E. Housley
They donot version the dist, but store them in versioned dir. Update Makefile to handle that. Update CHECKSUM Submitted by: bento
2000-11-02Updated to new version. That is the pits, the day after it becomesJames E. Housley
a port they release a new version. This is a new version, w/o a number. PR: 22522 Submitted by: Tony Maher <tonym@dt.home> MAINTAINER
2000-11-01Make portlint happy, remove a spaceJames E. Housley
2000-11-01Update to version 1.7.0James E. Housley
PR: 22474 Submitted by: Johann Visagie <johann@egenetics.com> MAINTAINER
2000-10-30File missing in pkg-plistJames E. Housley
Submitted by: bento
2000-10-29New Port: biology/ncbi-toolkitJames E. Housley
National Center for Biotechnology Information (NCBI) Development Toolkit. PR: 22388 Submitted by: Tony Maher <tony.maher@ebioinformatics.com>
2000-10-26Update biology/sim4 to 2000.10.19James E. Housley
Maintainership over to FreeBSD bio-porters mailing list PR: 22306 Submitted by: Johann Visagie <johann@egenetics.com> MAINTAINER
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