diff options
Diffstat (limited to 'science')
461 files changed, 22 insertions, 922 deletions
diff --git a/science/2d-rewriter/pkg-descr b/science/2d-rewriter/pkg-descr index 64c33e771b0c..c5deef112a70 100644 --- a/science/2d-rewriter/pkg-descr +++ b/science/2d-rewriter/pkg-descr @@ -8,5 +8,3 @@ sets and defining patterns using variables. - Required run time environment is a minimal X window system installation on a POSIX-compatible system (*BSD/Linux/Mac OS X/Cygwin/...). - -WWW: https://github.com/iserikov/2d-rewriter diff --git a/science/ALPSCore/pkg-descr b/science/ALPSCore/pkg-descr index 0d03fab172c3..f420eb31d6fe 100644 --- a/science/ALPSCore/pkg-descr +++ b/science/ALPSCore/pkg-descr @@ -5,5 +5,3 @@ strongly correlated systems. This project strives to provide a convenient set of maintained, well-documented, and reusable components for developing condensed matter physics simulation code, to help application developers make commonly used and proven computational algorithms available to a non-expert community. - -WWW: https://github.com/ALPSCore/ALPSCore diff --git a/science/ChipmunkPhysics/pkg-descr b/science/ChipmunkPhysics/pkg-descr index 730d55c094a9..af041abeeb97 100644 --- a/science/ChipmunkPhysics/pkg-descr +++ b/science/ChipmunkPhysics/pkg-descr @@ -1,5 +1,3 @@ Chipmunk is a simple, lightweight, fast and portable 2D rigid body physics library written in C. It is licensed under the unrestrictive, OSI approved MIT license. - -WWW: http://chipmunk-physics.net/ diff --git a/science/InsightToolkit/pkg-descr b/science/InsightToolkit/pkg-descr index 1c12877b4c23..f44d01713fcc 100644 --- a/science/InsightToolkit/pkg-descr +++ b/science/InsightToolkit/pkg-descr @@ -6,5 +6,3 @@ CT or MRI scanners. Registration is the task of aligning or developing correspondences between data. For example, in the medical environment, a CT scan may be aligned with a MRI scan in order to combine the information contained in both. - -WWW: http://www.itk.org diff --git a/science/PETSc/pkg-descr b/science/PETSc/pkg-descr index b4fbcfaf59e6..7358e00bb4e7 100644 --- a/science/PETSc/pkg-descr +++ b/science/PETSc/pkg-descr @@ -3,5 +3,3 @@ scientific applications modeled by partial differential equations. It supports MPI, and GPUs through CUDA or OpenCL, as well as hybrid MPI-GPU parallelism. PETSc (sometimes called PETSc/Tao) also contains the Tao optimization software library. - -WWW: http://www.mcs.anl.gov/petsc diff --git a/science/R-cran-AMORE/pkg-descr b/science/R-cran-AMORE/pkg-descr index 919e7a4eddde..934b4118a703 100644 --- a/science/R-cran-AMORE/pkg-descr +++ b/science/R-cran-AMORE/pkg-descr @@ -2,5 +2,3 @@ R-cran-AMORE was born to release the TAO robust neural network algorithm to the R users. It has grown and I think it can be of interest for the users wanting to implement their own training algorithms as well as for those others whose needs lye only in the "user space". - -WWW: http://rwiki.sciviews.org/doku.php?id=packages:cran:amore diff --git a/science/R-cran-DCluster/pkg-descr b/science/R-cran-DCluster/pkg-descr index 1f7bf86ac495..e7d429d065d5 100644 --- a/science/R-cran-DCluster/pkg-descr +++ b/science/R-cran-DCluster/pkg-descr @@ -1,5 +1,3 @@ A set of functions for the detection of spatial clusters of disease using count data. Bootstrap is used to estimate sampling distributions of statistics. - -WWW: http://cran.r-project.org/web/packages/DCluster/ diff --git a/science/R-cran-Epi/pkg-descr b/science/R-cran-Epi/pkg-descr index 442b1cc44ee1..2dbcd98af9a0 100644 --- a/science/R-cran-Epi/pkg-descr +++ b/science/R-cran-Epi/pkg-descr @@ -3,5 +3,3 @@ diagram, i.e. register and cohort follow-up data, including interval censored data and representation of multistate data. Also some useful functions for tabulation and plotting. Contains some epidemiological datasets. - -WWW: https://cran.r-project.org/web/packages/Epi/ diff --git a/science/R-cran-FAdist/pkg-descr b/science/R-cran-FAdist/pkg-descr index 95e3aadce071..ea174121be51 100644 --- a/science/R-cran-FAdist/pkg-descr +++ b/science/R-cran-FAdist/pkg-descr @@ -1,4 +1,2 @@ An R package with a collection of probability distributions that are sometimes used in hydrology. - -WWW: https://cran.r-project.org/web/packages/FAdist/index.html diff --git a/science/R-cran-bayesm/pkg-descr b/science/R-cran-bayesm/pkg-descr index 681ddd86a291..3af61271c8dc 100644 --- a/science/R-cran-bayesm/pkg-descr +++ b/science/R-cran-bayesm/pkg-descr @@ -12,5 +12,3 @@ prior and covariates, Hierarchical Negative Binomial Regression Models, Bayesian analysis of choice-based conjoint data, Bayesian treatment of linear instrumental variables models, and Analysis of Multivariate Ordinal survey data with scale usage heterogeneity (as in Rossi et al, JASA (01)). - -WWW: http://www.perossi.org/home/bsm-1 diff --git a/science/R-cran-cmprsk/pkg-descr b/science/R-cran-cmprsk/pkg-descr index bdf421b28ec0..53d10304916a 100644 --- a/science/R-cran-cmprsk/pkg-descr +++ b/science/R-cran-cmprsk/pkg-descr @@ -4,5 +4,3 @@ of K-sample tests for comparing the cumulative incidence of a competing risk, Ann. Stat. 16:1141-1154, and Fine JP and Gray RJ (1999), A proportional hazards model for the subdistribution of a competing risk, JASA, 94:496-509. - -WWW: https://cran.r-project.org/web/packages/cmprsk/ diff --git a/science/R-cran-e1071/pkg-descr b/science/R-cran-e1071/pkg-descr index 38372283d61a..08211dc9b39c 100644 --- a/science/R-cran-e1071/pkg-descr +++ b/science/R-cran-e1071/pkg-descr @@ -1,5 +1,3 @@ Functions for latent class analysis, short time Fourier transform, fuzzy clustering, support vector machines, shortest path computation, bagged clustering, naive Bayes classifier, ... - -WWW: https://cran.r-project.org/web/packages/e1071/ diff --git a/science/R-cran-eco/pkg-descr b/science/R-cran-eco/pkg-descr index bd0f64afacb3..5d82489bddf2 100644 --- a/science/R-cran-eco/pkg-descr +++ b/science/R-cran-eco/pkg-descr @@ -2,5 +2,3 @@ eco is a publicly available R package that implements the Bayesian and likelihood methods proposed in Imai, Lu, and Strauss (2008) for ecological inference in $2 \times 2$ tables as well as the method of bounds introduced by Duncan and Davis (1953). - -WWW: http://imai.princeton.edu/software/eco.html diff --git a/science/R-cran-epicalc/pkg-descr b/science/R-cran-epicalc/pkg-descr index 3f36bfe8d83f..bf925e37b7ea 100644 --- a/science/R-cran-epicalc/pkg-descr +++ b/science/R-cran-epicalc/pkg-descr @@ -1,3 +1 @@ R-cran-epicalc is functions making R easy for epidemiological calculation. - -WWW: http://cran.r-project.org/web/packages/epicalc/ diff --git a/science/R-cran-etm/pkg-descr b/science/R-cran-etm/pkg-descr index 221715855d61..34b5484398ff 100644 --- a/science/R-cran-etm/pkg-descr +++ b/science/R-cran-etm/pkg-descr @@ -1,4 +1,2 @@ Matrix of transition probabilities for any time-inhomogeneous multistate model with finite state space - -WWW: https://cran.r-project.org/web/packages/etm/ diff --git a/science/R-cran-fastICA/pkg-descr b/science/R-cran-fastICA/pkg-descr index 517e1ea0f8f3..8c06ee3816ab 100644 --- a/science/R-cran-fastICA/pkg-descr +++ b/science/R-cran-fastICA/pkg-descr @@ -1,4 +1,2 @@ Implementation of FastICA algorithm to perform Independent Component Analysis (ICA) and Projection Pursuit. - -WWW: https://CRAN.R-project.org/package=fastICA diff --git a/science/R-cran-kernlab/pkg-descr b/science/R-cran-kernlab/pkg-descr index 5d88394f2cfc..b9f367db930a 100644 --- a/science/R-cran-kernlab/pkg-descr +++ b/science/R-cran-kernlab/pkg-descr @@ -3,5 +3,3 @@ clustering, novelty detection, quantile regression and dimensionality reduction. Among other methods 'kernlab' includes Support Vector Machines, Spectral Clustering, Kernel PCA, Gaussian Processes and a QP solver. - -WWW: https://cran.r-project.org/web/packages/kernlab/ diff --git a/science/R-cran-ks/pkg-descr b/science/R-cran-ks/pkg-descr index 3ba26c96fbe5..7c27605ef96b 100644 --- a/science/R-cran-ks/pkg-descr +++ b/science/R-cran-ks/pkg-descr @@ -2,5 +2,4 @@ Kernel smoothers for univariate and multivariate data, including densities, density derivatives, cumulative distributions, clustering, classification, density ridges, significant modal regions, and two-sample hypothesis tests. -WWW: https://cran.r-project.org/package=ks -WWW: https://www.mvstat.net/mvksa/ +See also: https://www.mvstat.net/mvksa/ diff --git a/science/R-cran-snow/pkg-descr b/science/R-cran-snow/pkg-descr index 48ad2779e2ee..9c5c450735ae 100644 --- a/science/R-cran-snow/pkg-descr +++ b/science/R-cran-snow/pkg-descr @@ -17,5 +17,3 @@ lamboot, for MPI clusters that use Rmpi and LAM-MPI. If NWS is used, the NetWorkSpaces server must be running. SOCK clusters are the easiest approach for using snow on a single multi-core computer as they require no additional software. - -WWW: https://cran.r-project.org/web/packages/snow/ diff --git a/science/R-cran-som/pkg-descr b/science/R-cran-som/pkg-descr index 69152a81d698..0d3fa17ea4c6 100644 --- a/science/R-cran-som/pkg-descr +++ b/science/R-cran-som/pkg-descr @@ -1,3 +1 @@ Self-Organizing Map (with application in gene clustering) - -WWW: http://cran.r-project.org/web/packages/som/ diff --git a/science/R-cran-udunits2/pkg-descr b/science/R-cran-udunits2/pkg-descr index ff848c665a35..ebaf9f22378c 100644 --- a/science/R-cran-udunits2/pkg-descr +++ b/science/R-cran-udunits2/pkg-descr @@ -1,3 +1 @@ Provides simple bindings to Unidata's udunits library. - -WWW: https://cran.r-project.org/web/packages/udunits2/ diff --git a/science/abinit/pkg-descr b/science/abinit/pkg-descr index 2cb92bc2a7c6..d8ccc7e622db 100644 --- a/science/abinit/pkg-descr +++ b/science/abinit/pkg-descr @@ -10,5 +10,3 @@ can be computed within the Many-Body Perturbation Theory (the GW approximation and the Bethe-Salpeter equation), and Time-Dependent Density Functional Theory (for molecules). In addition to the main ABINIT code, different utility programs are provided. - -WWW: https://www.abinit.org diff --git a/science/afni/pkg-descr b/science/afni/pkg-descr index 960c4832beb5..c781bc7ffacf 100644 --- a/science/afni/pkg-descr +++ b/science/afni/pkg-descr @@ -1,5 +1,3 @@ AFNI (Analysis of Functional Neuro Imaging) is a tool for analyzing 3-dimensional images, especially functional MRI images used in brain mapping research. - -WWW: http://afni.nimh.nih.gov/afni/ diff --git a/science/agrum/pkg-descr b/science/agrum/pkg-descr index 4b562b8d89b7..e482c6fd7c3f 100644 --- a/science/agrum/pkg-descr +++ b/science/agrum/pkg-descr @@ -9,5 +9,3 @@ following tasks: * elicitation of graphical models, * inference within graphical models, * planification. - -WWW: https://agrum.gitlab.io/ diff --git a/science/aircraft-datcom/pkg-descr b/science/aircraft-datcom/pkg-descr index 07bf553be5cc..0a6fee21a69c 100644 --- a/science/aircraft-datcom/pkg-descr +++ b/science/aircraft-datcom/pkg-descr @@ -11,5 +11,3 @@ WWW: http://www.pdas.com/datcom.html This project is a modified version of the publically released USAF aircraft datcom. The goal of the project is to update the code and make it more usable by the end user. - -WWW: https://github.com/arktools/aircraft-datcom diff --git a/science/antioch/pkg-descr b/science/antioch/pkg-descr index c5f1cda585bd..2ef1f2747bfe 100644 --- a/science/antioch/pkg-descr +++ b/science/antioch/pkg-descr @@ -2,5 +2,3 @@ A New Templated Implementation Of Chemistry for Hydrodynamics (Antioch) was initiated to centralize work within the realm of hypersonic aerodynamics, based on the libMesh finite element library. It's features include thread-safety and high performance. - -WWW: https://libantioch.github.io/ diff --git a/science/apbs/pkg-descr b/science/apbs/pkg-descr index 00af946b058d..2e9f8bbea39f 100644 --- a/science/apbs/pkg-descr +++ b/science/apbs/pkg-descr @@ -4,5 +4,3 @@ APBS solves the equations of continuum electrostatics for large biomolecular assemblages. This software was designed "from the ground up" using modern design principles to ensure its ability to interface with other computational packages and evolve as methods and applications change over time. - -WWW: https://www.poissonboltzmann.org/ diff --git a/science/ascent/pkg-descr b/science/ascent/pkg-descr index 4f5d6b4896bd..49d769cacb8f 100644 --- a/science/ascent/pkg-descr +++ b/science/ascent/pkg-descr @@ -7,5 +7,3 @@ It supports: * Young effort, yet already includes most common visualization operations * Provides a simple infrastructure to integrate custom analysis * Provides C++, C, Python, and Fortran APIs - -WWW: https://ascent.readthedocs.io/en/latest/ diff --git a/science/atompaw/pkg-descr b/science/atompaw/pkg-descr index bfe3c17fc5ba..1a0360ef0e11 100644 --- a/science/atompaw/pkg-descr +++ b/science/atompaw/pkg-descr @@ -4,5 +4,3 @@ augmented wave (PAW) method. PAW method is based on the publication http://www.sciencedirect.com/science/article/pii/S0370157300000077 - -WWW: http://users.wfu.edu/natalie/papers/pwpaw/ diff --git a/science/avogadro2/pkg-descr b/science/avogadro2/pkg-descr index 8375ccfdcc0c..de30a5e5cd37 100644 --- a/science/avogadro2/pkg-descr +++ b/science/avogadro2/pkg-descr @@ -18,5 +18,3 @@ chemistry codes today. Emphasis has also been placed on making it even easier to extend, using simple Python scripts to add simulation input capabilities, and data input/output along with access to full-blown C++ plugin APIs where more control is required. - -WWW: https://www.openchemistry.org/projects/avogadro2/ diff --git a/science/avogadrolibs/pkg-descr b/science/avogadrolibs/pkg-descr index ad836a540d4e..0ef9df17e558 100644 --- a/science/avogadrolibs/pkg-descr +++ b/science/avogadrolibs/pkg-descr @@ -20,5 +20,3 @@ chemistry codes today. Emphasis has also been placed on making it even easier to extend, using simple Python scripts to add simulation input capabilities, and data input/output along with access to full-blown C++ plugin APIs where more control is required. - -WWW: https://www.openchemistry.org/projects/avogadro2/ diff --git a/science/axom/pkg-descr b/science/axom/pkg-descr index 6e9ee51e07a5..3153dad62e76 100644 --- a/science/axom/pkg-descr +++ b/science/axom/pkg-descr @@ -1,4 +1,2 @@ Axom provides robust, flexible software infrastructure for the development of multi-physics applications and computational tools. - -WWW: https://github.com/LLNL/axom diff --git a/science/bagel/pkg-descr b/science/bagel/pkg-descr index a52baed4079d..228f54215e38 100644 --- a/science/bagel/pkg-descr +++ b/science/bagel/pkg-descr @@ -3,5 +3,3 @@ Public License. BAGEL is intended for use by researchers performing quantum chemistry computations. - -WWW: https://nubakery.org/ diff --git a/science/bddsolve/pkg-descr b/science/bddsolve/pkg-descr index d611aad4f5cc..0f44767cd3f7 100644 --- a/science/bddsolve/pkg-descr +++ b/science/bddsolve/pkg-descr @@ -1,4 +1,2 @@ Bddsolve is a BDD-based tool for solving satisfiability and reachability problems. It uses the BDD package Buddy as a backend. - -WWW: http://www.win.tue.nl/~wieger/bddsolve/ diff --git a/science/berkeleygw/pkg-descr b/science/berkeleygw/pkg-descr index dbb9f0b3a9b5..61261a274dc5 100644 --- a/science/berkeleygw/pkg-descr +++ b/science/berkeleygw/pkg-descr @@ -13,5 +13,3 @@ codes: methodology of Hybertsen and Louie within the generalized plasmon-pole model for the frequency-dependent dielectric matrix. * BSE solves the Bethe-Salpeter equation for correlated electron-hole excitations. - -WWW: https://berkeleygw.org diff --git a/science/bodr/pkg-descr b/science/bodr/pkg-descr index 54dcf775d5c1..6d26f7e0b0dd 100644 --- a/science/bodr/pkg-descr +++ b/science/bodr/pkg-descr @@ -2,5 +2,3 @@ The Blue Obelisk Data Repository lists many important chemoinformatics data such as element and isotope properties, atomic radii, etc. including references to original literature. Developers can use this repository to make their software interoperable. - -WWW: https://sourceforge.net/projects/bodr/ diff --git a/science/buddy/pkg-descr b/science/buddy/pkg-descr index 64f9a6b75249..93f36e397cbe 100644 --- a/science/buddy/pkg-descr +++ b/science/buddy/pkg-descr @@ -2,5 +2,3 @@ BuDDY is a Binary Decision Diagram library, with: many highly efficient vectorized BDD operations, dynamic variable reordering, automated garbage collection, a C++ interface with automatic reference counting, and much more. - -WWW: http://buddy.sourceforge.net/ diff --git a/science/cantera/pkg-descr b/science/cantera/pkg-descr index 7ebb53c5c9c7..c5c78d1a99cb 100644 --- a/science/cantera/pkg-descr +++ b/science/cantera/pkg-descr @@ -1,4 +1,2 @@ Cantera is an open-source suite of tools for problems involving chemical kinetics, thermodynamics, and transport processes. - -WWW: https://cantera.org/ diff --git a/science/cardioid/pkg-descr b/science/cardioid/pkg-descr index d8361d2e9d39..db934dd0e133 100644 --- a/science/cardioid/pkg-descr +++ b/science/cardioid/pkg-descr @@ -2,5 +2,3 @@ Cardioid is a cardiac multiscale simulation suite spanning from subcellular mechanisms up to simulations of organ-level clinical phenomena. The suite contains tools for simulating cardiac electrophysiology, cardiac mechanics, torso-ECGs, cardiac meshing and fiber generation tools. - -WWW: https://github.com/LLNL/cardioid diff --git a/science/cdcl/pkg-descr b/science/cdcl/pkg-descr index c8b2bafcb9a4..6b586e9b75af 100644 --- a/science/cdcl/pkg-descr +++ b/science/cdcl/pkg-descr @@ -1,4 +1,2 @@ DCL is scientific graphic library for geoscience, written in Fortran. DCL-C is converted from Fortran version of DCL. - -WWW: http://www.gfd-dennou.org/arch/dcl/ diff --git a/science/cdf/pkg-descr b/science/cdf/pkg-descr index 4e8f2e404413..8853a34d0f00 100644 --- a/science/cdf/pkg-descr +++ b/science/cdf/pkg-descr @@ -10,5 +10,3 @@ to CDF can be found in the CDF User's Guide. A comparison between CDF, netCDF, HDF and HDF5 is available at <http://cdf.gsfc.nasa.gov/html/FAQ.html>. - -WWW: https://cdf.gsfc.nasa.gov/ diff --git a/science/cdk/pkg-descr b/science/cdk/pkg-descr index 91b69937c2d0..cdefed68d4e7 100644 --- a/science/cdk/pkg-descr +++ b/science/cdk/pkg-descr @@ -9,5 +9,3 @@ Key Features: * Substructure and SMARTS pattern searching. * ECFP, Daylight, MACCS, and other fingerprint methods for similarity searching. * QSAR descriptor calculations - -WWW: https://cdk.github.io/ diff --git a/science/cdo/pkg-descr b/science/cdo/pkg-descr index 4352485b366a..3db798464c4d 100644 --- a/science/cdo/pkg-descr +++ b/science/cdo/pkg-descr @@ -19,5 +19,3 @@ overview about the main categories. * Field interpolation (remapbil, remapcon, remapdis, ...) * Vertical interpolation (ml2pl, ml2hl) * Time interpolation (inttime, intyear) - -WWW: https://code.mpimet.mpg.de/projects/cdo diff --git a/science/cgnslib/pkg-descr b/science/cgnslib/pkg-descr index 653b4b6b6b9a..7d1f66e7d5b2 100644 --- a/science/cgnslib/pkg-descr +++ b/science/cgnslib/pkg-descr @@ -1,5 +1,3 @@ The CFD General Notation System (CGNS) provides a standard for recording and recovering computer data associated with the numerical solution of the equations of fluid dynamics. - -WWW: http://cgns.github.io/ diff --git a/science/cgribex/pkg-descr b/science/cgribex/pkg-descr index 07f1036a18df..67125ef74d16 100644 --- a/science/cgribex/pkg-descr +++ b/science/cgribex/pkg-descr @@ -7,5 +7,3 @@ written in Fortran. Therefore it has only a Fortran interface. CGRIBEX is a lightweight version of GRIBEX written in ANSI C with a portable Fortran interface. For best compatibility some of the C sources were converted from the Fortran GRIBEX version. - -WWW: https://code.mpimet.mpg.de/projects/cgribex diff --git a/science/checkmol/pkg-descr b/science/checkmol/pkg-descr index 748ea1fb84cb..5cdb38421555 100644 --- a/science/checkmol/pkg-descr +++ b/science/checkmol/pkg-descr @@ -23,5 +23,3 @@ back-end program for structure/substructure search operations in chemical databases. The port installs both checkmol and matchmol. - -WWW: https://homepage.univie.ac.at/norbert.haider/cheminf/cmmm.html diff --git a/science/chemical-mime-data/pkg-descr b/science/chemical-mime-data/pkg-descr index fad823cd9164..57a0607d1cc5 100644 --- a/science/chemical-mime-data/pkg-descr +++ b/science/chemical-mime-data/pkg-descr @@ -1,4 +1,2 @@ The chemical-mime-data package is a collection of data files to add support for various chemical MIME types on Linux/UNIX desktops, such as KDE and GNOME. - -WWW: http://chemical-mime.sourceforge.net/ diff --git a/science/chemicalfun/pkg-descr b/science/chemicalfun/pkg-descr index 7fcf96a2a48a..40a5181881ac 100644 --- a/science/chemicalfun/pkg-descr +++ b/science/chemicalfun/pkg-descr @@ -1,5 +1,3 @@ ChemicalFun is a C++ library (Python and C++ API) for generating balanced chemical reactions and for parsing and calculating properties of chemical formulas. - -WWW: https://bitbucket.org/gems4/chemicalfun/src/master/ diff --git a/science/chemps2/pkg-descr b/science/chemps2/pkg-descr index b85003551502..03af03948a69 100644 --- a/science/chemps2/pkg-descr +++ b/science/chemps2/pkg-descr @@ -9,5 +9,3 @@ For general active spaces up to 40 electrons in 40 orbitals can be handled with DMRG, and for one-dimensional active spaces up to 100 electrons in 100 orbitals. The 2-RDM of these active spaces can also be easily extracted, while the 3- and 4-RDM are limited to about 28 orbitals. - -WWW: https://github.com/SebWouters/CheMPS2 diff --git a/science/chemtool-devel/pkg-descr b/science/chemtool-devel/pkg-descr index 4ee575e59547..83efa707688b 100644 --- a/science/chemtool-devel/pkg-descr +++ b/science/chemtool-devel/pkg-descr @@ -1,4 +1,2 @@ Chemtool is a program for drawing organic molecules easily and store them as a X bitmap file (develop version). - -WWW: http://ruby.chemie.uni-freiburg.de/~martin/chemtool/ diff --git a/science/chemtool/pkg-descr b/science/chemtool/pkg-descr index 45636f9566f9..b15b74e7d20e 100644 --- a/science/chemtool/pkg-descr +++ b/science/chemtool/pkg-descr @@ -1,4 +1,2 @@ Chemtool is a program for drawing organic molecules easily and storing them as an X bitmap file. - -WWW: http://ruby.chemie.uni-freiburg.de/~martin/chemtool/ diff --git a/science/chimes-calculator/pkg-descr b/science/chimes-calculator/pkg-descr index 4ad922df6f39..c1a3790fe3db 100644 --- a/science/chimes-calculator/pkg-descr +++ b/science/chimes-calculator/pkg-descr @@ -15,5 +15,3 @@ etc). Users have the option of directly embedding the ChIMES calculator within their codes, or evaluating interactions through the beginner-friendly serial interface, each of which have Python, C++, C, and FORTRAN API's. - -WWW: https://github.com/rk-lindsey/chimes_calculator diff --git a/science/chrono/pkg-descr b/science/chrono/pkg-descr index c00893c7861f..67e7406cbcd3 100644 --- a/science/chrono/pkg-descr +++ b/science/chrono/pkg-descr @@ -5,5 +5,3 @@ its features are listed below. More information is available at the project website. The applications areas in which Chrono is most often used are vehicle dynamics, robotics, and machine design. In vehicle dynamics, Chrono has mature support for tire/terrain interaction modeling and simulation. - -WWW: https://projectchrono.org/ diff --git a/science/clhep/pkg-descr b/science/clhep/pkg-descr index fd33c6dadec2..be1b70318886 100644 --- a/science/clhep/pkg-descr +++ b/science/clhep/pkg-descr @@ -1,5 +1,3 @@ CLHEP is intended to be a set of HEP-specific foundation and utility classes such as random generators, physics vectors, geometry and linear algebra. - -WWW: http://wwwasd.web.cern.ch/wwwasd/lhc++/clhep/index.html diff --git a/science/clipper/pkg-descr b/science/clipper/pkg-descr index abe0d2acf9ff..97e04c8c289c 100644 --- a/science/clipper/pkg-descr +++ b/science/clipper/pkg-descr @@ -4,5 +4,3 @@ computation. The libraries are designed as a framework for new crystallographic software, which will allow the full power of modern programming techniques to be exploited by the developer. This will lead to greater functionality from simpler code which will be easier to develop and debug. - -WWW: http://www.ysbl.york.ac.uk/~cowtan/clipper/ diff --git a/science/code_saturne/pkg-descr b/science/code_saturne/pkg-descr index 8a17e4af26bb..2f7714ebb1b8 100644 --- a/science/code_saturne/pkg-descr +++ b/science/code_saturne/pkg-descr @@ -7,5 +7,3 @@ Dedicated modules are available for specific physics such as radiative heat transfer, combustion (gas, coal, heavy fuel oil, ...), magneto-hydrodynamics, compressible flows, two-phase flows (Euler-Lagrange approach with two-way coupling), or atmospheric flows. - -WWW: https://www.code-saturne.org/ diff --git a/science/colt/pkg-descr b/science/colt/pkg-descr index 3fc52b58a073..ef64e8c44648 100644 --- a/science/colt/pkg-descr +++ b/science/colt/pkg-descr @@ -7,5 +7,3 @@ The Colt library provides fundamental general-purpose data structures optimized for numerical data, such as resizable arrays, dense and sparse matrices (multi-dimensional arrays), linear algebra, associative containers and buffer management. - -WWW: http://acs.lbl.gov/~hoschek/colt/ diff --git a/science/conduit/pkg-descr b/science/conduit/pkg-descr index 37210fef5e74..b0360637e8b5 100644 --- a/science/conduit/pkg-descr +++ b/science/conduit/pkg-descr @@ -2,5 +2,3 @@ Conduit is an open source project from Lawrence Livermore National Laboratory that provides an intuitive model for describing hierarchical scientific data in C++, C, Fortran, and Python. It is used for data coupling between packages in-core, serialization, and I/O tasks. - -WWW: https://github.com/LLNL/conduit diff --git a/science/coordgenlibs/pkg-descr b/science/coordgenlibs/pkg-descr index b10f9e0f8d78..5b5c888a915a 100644 --- a/science/coordgenlibs/pkg-descr +++ b/science/coordgenlibs/pkg-descr @@ -3,5 +3,3 @@ algorithms are on quality of 2D coordinates rather than speed of generation. The algorithm distinguishes itself from many others by doing well with both macrocycles and metal complexes. It also does extremely well on typical drug-like small molecules, and has been validated on millions of compounds. - -WWW: https://github.com/schrodinger/coordgenlibs diff --git a/science/cp2k-data/pkg-descr b/science/cp2k-data/pkg-descr index 2a6cb1ed5ff1..6cf076c32a43 100644 --- a/science/cp2k-data/pkg-descr +++ b/science/cp2k-data/pkg-descr @@ -1,4 +1,2 @@ Data files used by the cp2k quantum chemistry package. They include pseudopotentials and other data needed for computations. - -WWW: https://www.cp2k.org/ diff --git a/science/cp2k/pkg-descr b/science/cp2k/pkg-descr index 1fd0f215eaa7..2535bd5c4322 100644 --- a/science/cp2k/pkg-descr +++ b/science/cp2k/pkg-descr @@ -8,5 +8,3 @@ fields (AMBER, CHARMM, ...). CP2K can do simulations of molecular dynamics, metadynamics, Monte Carlo, Ehrenfest dynamics, vibrational analysis, core level spectroscopy, energy minimization, and transition state optimization using NEB or dimer method. - -WWW: https://www.cp2k.org/ diff --git a/science/crf++/pkg-descr b/science/crf++/pkg-descr index dfc641cdb775..8c0c498b6c57 100644 --- a/science/crf++/pkg-descr +++ b/science/crf++/pkg-descr @@ -4,5 +4,3 @@ for segmenting/labeling sequential data. CRF++ is designed for generic purpose and will be applied to a variety of NLP tasks, such as Named Entity Recognition, Information Extraction and Text Chunking. - -WWW: https://taku910.github.io/crfpp/ diff --git a/science/csvtk/pkg-descr b/science/csvtk/pkg-descr index 669e30d7b21f..795e0d616cb1 100644 --- a/science/csvtk/pkg-descr +++ b/science/csvtk/pkg-descr @@ -9,5 +9,3 @@ with different datasets or purposes. csvtk is convenient for rapid data investigation and also easy to integrate into analysis pipelines. It could save you lots of time in (not) writing Python/R scripts. - -WWW: https://bioinf.shenwei.me/csvtk/ diff --git a/science/dakota/pkg-descr b/science/dakota/pkg-descr index fb312b782cec..5b1458b97da2 100644 --- a/science/dakota/pkg-descr +++ b/science/dakota/pkg-descr @@ -2,5 +2,3 @@ The Dakota project delivers both state-of-the-art research and robust, usable software for optimization and UQ. Broadly, the Dakota software's advanced parametric analyses enable design exploration, model calibration, risk analysis, and quantification of margins and uncertainty with computational models. - -WWW: https://dakota.sandia.gov/ diff --git a/science/dalton/pkg-descr b/science/dalton/pkg-descr index 32968ea609e3..eb08242df5e5 100644 --- a/science/dalton/pkg-descr +++ b/science/dalton/pkg-descr @@ -1,5 +1,3 @@ The Dalton program is designed to allow convenient, automated determination of a large number of molecular properties based on an HF, DFT, MP2, coupled cluster, or MCSCF reference wave function. - -WWW: https://daltonprogram.org/ diff --git a/science/dcl/pkg-descr b/science/dcl/pkg-descr index d38a5c84368e..30c6763748da 100644 --- a/science/dcl/pkg-descr +++ b/science/dcl/pkg-descr @@ -1,3 +1 @@ DCL is scientific graphic library for geoscience, written in Fortran. - -WWW: http://www.gfd-dennou.org/arch/dcl/ diff --git a/science/devisor/pkg-descr b/science/devisor/pkg-descr index 394eb82f9792..e0cf36aa7aef 100644 --- a/science/devisor/pkg-descr +++ b/science/devisor/pkg-descr @@ -10,5 +10,3 @@ All of this can be done in a very confortable manner using a simple point and click interface like in common vector-based image processing software. Both the reliable FEAT file format and the new FEAST format with integrated parallelism are supported. - -WWW: http://www.featflow.de/ diff --git a/science/dftbplus/pkg-descr b/science/dftbplus/pkg-descr index a5ecdd4e7e4f..6a503b46f20d 100644 --- a/science/dftbplus/pkg-descr +++ b/science/dftbplus/pkg-descr @@ -5,5 +5,3 @@ two orders of magnitude in speed. DFTB+ can be used either as a standalone application or embeded it into other academic or commercial simulation packages as a library. - -WWW: https://dftbplus.org/ diff --git a/science/dftd4/pkg-descr b/science/dftd4/pkg-descr index 6bdf1b4d19d1..686c99dce6d9 100644 --- a/science/dftd4/pkg-descr +++ b/science/dftd4/pkg-descr @@ -1,4 +1,2 @@ D4 is - a generally applicable atomic-charge dependent london dispersion correction calculator. - -WWW: https://www.chemie.uni-bonn.de/pctc/mulliken-center/software/dftd4 diff --git a/science/dimod/pkg-descr b/science/dimod/pkg-descr index dcaf688769da..028b96ef6650 100644 --- a/science/dimod/pkg-descr +++ b/science/dimod/pkg-descr @@ -7,5 +7,3 @@ dimod is a shared API for samplers. It provides: - and higher-order (non-quadratic) models * reference examples of samplers and composed samplers * abstract base classes for constructing new samplers and composed samplers - -WWW: https://github.com/dwavesystems/dimod diff --git a/science/dirac/pkg-descr b/science/dirac/pkg-descr index 1cc7814dd248..9496519b3eae 100644 --- a/science/dirac/pkg-descr +++ b/science/dirac/pkg-descr @@ -1,5 +1,3 @@ The DIRAC program computes molecular properties using relativistic quantum chemical methods. It is named after P.A.M. Dirac, the father of relativistic electronic structure theory. - -WWW: http://diracprogram.org/doku.php diff --git a/science/dkh/pkg-descr b/science/dkh/pkg-descr index cdcc6247f05d..ff13155e813d 100644 --- a/science/dkh/pkg-descr +++ b/science/dkh/pkg-descr @@ -6,5 +6,3 @@ It is based on these publications: http://dx.doi.org/10.1063/1.1515314 * M. Reiher, A. Wolf, J. Chem. Phys. 121, 10945 (2004); http://dx.doi.org/10.1063/1.1818681 - -WWW: http://www.reiher.ethz.ch/software/dkh-x2c.html diff --git a/science/dlib-cpp/pkg-descr b/science/dlib-cpp/pkg-descr index e21d365dbaac..5a6cf126961b 100644 --- a/science/dlib-cpp/pkg-descr +++ b/science/dlib-cpp/pkg-descr @@ -3,5 +3,3 @@ and tools for creating complex software in C++ to solve real world problems. It is used in both industry and academia in a wide range of domains including robotics, embedded devices, mobile phones, and large high performance computing environments. - -WWW: http://dlib.net diff --git a/science/drawxtl/pkg-descr b/science/drawxtl/pkg-descr index aabe6deb0b45..01dcfae6202c 100644 --- a/science/drawxtl/pkg-descr +++ b/science/drawxtl/pkg-descr @@ -6,5 +6,3 @@ and operating systems. Four forms of graphics are produced: (VRML) for dissemination across the Internet, and (4) a Postscript rendering of the OpenGL window for those that want high-quality output but do not have POV-RAY installed. - -WWW: http://www.lwfinger.net/drawxtl/ diff --git a/science/dvc/pkg-descr b/science/dvc/pkg-descr index f5fdbd014a2c..a66a0f5bee82 100644 --- a/science/dvc/pkg-descr +++ b/science/dvc/pkg-descr @@ -10,5 +10,3 @@ interface it helps data scientists: It aims to replace tools like Excel and Docs that are being commonly used as a knowledge repo and a ledger for the team, ad-hoc scripts to track and move deploy different model versions, ad-hoc data file suffixes and prefixes. - -WWW: https://dvc.org/ diff --git a/science/dwave-preprocessing/pkg-descr b/science/dwave-preprocessing/pkg-descr index 602f35493d33..56e0d5abba19 100644 --- a/science/dwave-preprocessing/pkg-descr +++ b/science/dwave-preprocessing/pkg-descr @@ -1,4 +1,2 @@ dwave-preprocessing is a package of common preprocessing tools that can aid in solving binary quadratic models (BQM). - -WWW: https://github.com/dwavesystems/dwave-preprocessing diff --git a/science/dynare/pkg-descr b/science/dynare/pkg-descr index 65ba2316f81b..a9ad073738a9 100644 --- a/science/dynare/pkg-descr +++ b/science/dynare/pkg-descr @@ -12,5 +12,3 @@ productive firms, governments, monetary authorities, investors and financial intermediaries. Some degree of heterogeneity can be achieved by including several distinct classes of agents in each of the aforementioned agent categories. - -WWW: https://www.dynare.org/ diff --git a/science/eccodes/pkg-descr b/science/eccodes/pkg-descr index f57c3c2c3035..5280ac94ebfb 100644 --- a/science/eccodes/pkg-descr +++ b/science/eccodes/pkg-descr @@ -17,5 +17,3 @@ For GRIB encoding and decoding, the GRIB-API functionality is provided fully in ecCodes with only minor interface and behaviour changes. Interfaces for C, Fortran 90 and Python are all maintained as in GRIB-API. However, the GRIB-API Fortran 77 interface is no longer available. - -WWW: https://confluence.ecmwf.int/display/ECC diff --git a/science/elk/pkg-descr b/science/elk/pkg-descr index 2c1c176e5dbe..664d1231839a 100644 --- a/science/elk/pkg-descr +++ b/science/elk/pkg-descr @@ -3,5 +3,3 @@ many advanced features. Written originally at Karl-Franzens-Universitat Graz as a milestone of the EXCITING EU Research and Training Network, the code is designed to be as simple as possible so that new developments in the field of density functional theory (DFT) can be added quickly and reliably. - -WWW: http://elk.sourceforge.net/ diff --git a/science/elmerfem/pkg-descr b/science/elmerfem/pkg-descr index be17d3136f9f..cb5c79f9f2de 100644 --- a/science/elmerfem/pkg-descr +++ b/science/elmerfem/pkg-descr @@ -6,5 +6,3 @@ New solvers can be added as separate modules linked into the program. While Elmer is powerful, it is not for the faint of heart. New users can expect to spend days or weeks honing their skills in one domain. - -WWW: https://www.csc.fi/web/elmer diff --git a/science/epte/pkg-descr b/science/epte/pkg-descr index fba41728abe5..51eb15ee98b5 100644 --- a/science/epte/pkg-descr +++ b/science/epte/pkg-descr @@ -1,5 +1,3 @@ epte is a curses-based periodic table of the elements. It provides a set of examples of the basic sets of constants and procedures needed to understand the behavior of matter. - -WWW: http://www.toddmiller.com/epte/ diff --git a/science/erd/pkg-descr b/science/erd/pkg-descr index fc9a438d75ab..f5f96af93b85 100644 --- a/science/erd/pkg-descr +++ b/science/erd/pkg-descr @@ -4,5 +4,3 @@ calculations. Based on the paper: * http://onlinelibrary.wiley.com/doi/10.1002/jcc.21018/abstract - -WWW: https://github.com/psi4/erd diff --git a/science/ergo/pkg-descr b/science/ergo/pkg-descr index 068a6411a8bd..ca02bab55adc 100644 --- a/science/ergo/pkg-descr +++ b/science/ergo/pkg-descr @@ -18,5 +18,3 @@ Key features of the Ergo program: memory utilization. * The time consuming parts of the code are currently parallelized using the shared-memory paradigm. - -WWW: http://www.ergoscf.org/ diff --git a/science/erkale-pseudopotentials/pkg-descr b/science/erkale-pseudopotentials/pkg-descr index a0571458084d..9a9104d65c7c 100644 --- a/science/erkale-pseudopotentials/pkg-descr +++ b/science/erkale-pseudopotentials/pkg-descr @@ -1,4 +1,2 @@ Pseudopotentials for ERKALE, a quantum chemistry program used to solve the electronic structure of atoms, molecules and molecular clusters. - -WWW: https://github.com/susilehtola/erkale diff --git a/science/erkale/pkg-descr b/science/erkale/pkg-descr index c79466ea9063..5bdb037032ae 100644 --- a/science/erkale/pkg-descr +++ b/science/erkale/pkg-descr @@ -6,5 +6,3 @@ absorption and x-ray Raman scattering) and valence electron excitation spectra of atoms and molecules. Subsequently, it has gained unique functionalities for basis set development as well as self-interaction corrected density-functional theory calculations. - -WWW: https://github.com/susilehtola/erkale diff --git a/science/fastcap/pkg-descr b/science/fastcap/pkg-descr index 58a0738eca67..8aeccac503eb 100644 --- a/science/fastcap/pkg-descr +++ b/science/fastcap/pkg-descr @@ -16,5 +16,3 @@ algorithm to efficiently compute the iterates. This version of fastcap has been cleaned up and enhanced by Stephen R. Whiteley of Whitleley Research Inc. --------------------- - -WWW: http://www.rle.mit.edu/cpg/research_codes.htm diff --git a/science/fasthenry/pkg-descr b/science/fasthenry/pkg-descr index 062d6edb1b9d..c768202557e1 100644 --- a/science/fasthenry/pkg-descr +++ b/science/fasthenry/pkg-descr @@ -12,5 +12,3 @@ segments and ground planes by Stephen R. Whiteley of Whitleley Research Inc. The analysis used is based on the London equations and the two-fluid model. Both reactive and lossy components of the superconductor complex conductivity are employed in obtaining the impedance matrix. - -WWW: http://www.rle.mit.edu/cpg/research_codes.htm diff --git a/science/fastjet/pkg-descr b/science/fastjet/pkg-descr index 0fa553123a6b..a8d4259fe8e2 100644 --- a/science/fastjet/pkg-descr +++ b/science/fastjet/pkg-descr @@ -2,5 +2,3 @@ FastJet is a software package for jet finding in pp and e+e- collisions. It includes fast native implementations of many sequential recombination clustering algorithms, plugins for access to a range of cone jet finders and tools for advanced jet manipulation. - -WWW: https://fastjet.fr/ diff --git a/science/fisicalab/pkg-descr b/science/fisicalab/pkg-descr index 13795ede842e..aad6e2f5a482 100644 --- a/science/fisicalab/pkg-descr +++ b/science/fisicalab/pkg-descr @@ -14,5 +14,3 @@ the following modules: - Dynamics of particles 2D. - Circular dynamics of particles 2D. - Heat, calorimetry, ideal gas and expansion. - -WWW: http://www.nongnu.org/fisicalab/ diff --git a/science/fleur/pkg-descr b/science/fleur/pkg-descr index 9e04fa68365d..5bc602722f41 100644 --- a/science/fleur/pkg-descr +++ b/science/fleur/pkg-descr @@ -3,5 +3,3 @@ all-electron method which within density functional theory is universally applicable to all atoms of the periodic table and to systems with compact as well as open structures. It is widely considered to be the most precise electronic structure method in solid state physics. - -WWW: https://www.flapw.de/master/ diff --git a/science/frontistr/pkg-descr b/science/frontistr/pkg-descr index 0fb6f0fd893d..d721f9713878 100644 --- a/science/frontistr/pkg-descr +++ b/science/frontistr/pkg-descr @@ -1,5 +1,4 @@ FrontISTR is an Open-Source Large-Scale Parallel FEM Program for Nonlinear Structural Analysis. -WWW: https://www.frontistr.com/ -WWW: https://gitlab.com/FrontISTR-Commons/FrontISTR +See also: https://www.frontistr.com/ diff --git a/science/fsom/pkg-descr b/science/fsom/pkg-descr index 66f1c23005f2..052c5dfff67f 100644 --- a/science/fsom/pkg-descr +++ b/science/fsom/pkg-descr @@ -2,5 +2,3 @@ FSOM is a tiny C library for managing SOM (Self-Organizing Maps) neural networks, a type of artificial neural network (ANN) that is trained using unsupervised learning to produce a low-dimensional (typically two-dimensional), discretized representation of the input space of the training samples. - -WWW: https://github.com/ekg/fsom diff --git a/science/fvcom/pkg-descr b/science/fvcom/pkg-descr index 02a4c11499f5..7fbf146e7779 100644 --- a/science/fvcom/pkg-descr +++ b/science/fvcom/pkg-descr @@ -1,5 +1,3 @@ FVCOM is a prognostic, unstructured-grid, finite-volume, free-surface, 3-D primitive equation coastal ocean circulation model developed by UMASSD-WHOI joint efforts. - -WWW: http://fvcom.smast.umassd.edu/FVCOM/index.html diff --git a/science/gabedit/pkg-descr b/science/gabedit/pkg-descr index b551841857fc..a078786d462f 100644 --- a/science/gabedit/pkg-descr +++ b/science/gabedit/pkg-descr @@ -14,5 +14,3 @@ Features: normal modes, geometry optimizations and reaction paths. * Molecular Dynamics using Amber 99 molecular mechanics or Semi-Empirical potentials. - -WWW: http://gabedit.sourceforge.net/ diff --git a/science/gamess-us/pkg-descr b/science/gamess-us/pkg-descr index 4c9698169452..3d8c02f192b1 100644 --- a/science/gamess-us/pkg-descr +++ b/science/gamess-us/pkg-descr @@ -17,5 +17,3 @@ can also be computed, in VSCF, or with explicit treatment of nuclear orbitals by the NEO code. This is the 'US' fork of GAMES. 'UK' fork also exists. - -WWW: https://www.msg.chem.iastate.edu/gamess/ diff --git a/science/gbtolib/pkg-descr b/science/gbtolib/pkg-descr index 909d403038a2..3896ef38ab2b 100644 --- a/science/gbtolib/pkg-descr +++ b/science/gbtolib/pkg-descr @@ -1,3 +1 @@ GBTOlib: a high-performance library for evaluation of molecular integrals. - -WWW: https://zenodo.org/record/5798035#.Yo1sazXMKV4 diff --git a/science/gchemutils/pkg-descr b/science/gchemutils/pkg-descr index 2eb4c646b117..faf8eeeba7da 100644 --- a/science/gchemutils/pkg-descr +++ b/science/gchemutils/pkg-descr @@ -8,5 +8,3 @@ to chemistry. It also contains these programs: * a periodic table of the elements * a Mozilla plugin (which displays only XYZ files at the moment) * a simple spectrum viewer (GSpectrum) - -WWW: http://www.nongnu.org/gchemutils/ diff --git a/science/gdma/pkg-descr b/science/gdma/pkg-descr index 261672f1ac19..27aa3f85fa53 100644 --- a/science/gdma/pkg-descr +++ b/science/gdma/pkg-descr @@ -2,5 +2,3 @@ GDMA has been in the ab initio quantum chemistry package Psi4. It is written by Prof. Anthony J. Stone of Cambridge University in fortran. - -WWW: https://github.com/psi4/gdma diff --git a/science/getdp/pkg-descr b/science/getdp/pkg-descr index 18941ce830a6..c870950abf33 100644 --- a/science/getdp/pkg-descr +++ b/science/getdp/pkg-descr @@ -4,5 +4,3 @@ de Rham-type complexes in one, two and three dimensions. The main feature of GetDP is the closeness between the input data defining discrete problems (written by the user in ASCII data files) and the symbolic mathematical expressions of these problems. - -WWW: http://www.geuz.org/getdp/ diff --git a/science/ghemical/pkg-descr b/science/ghemical/pkg-descr index 0c43a80e98fd..61d649df6f7b 100644 --- a/science/ghemical/pkg-descr +++ b/science/ghemical/pkg-descr @@ -4,5 +4,3 @@ Ghemical relies on external code to provide the quantum-mechanical calculations. Semi-empirical methods MNDO, MINDO/3, AM1 and PM3 come from the MOPAC7 package, and are included in the source distribution. The MPQC package (GNU GPL) is used to provide ab initio methods. - -WWW: https://www.bioinformatics.org/ghemical/ghemical/index.html diff --git a/science/ghmm/pkg-descr b/science/ghmm/pkg-descr index 4b6ea8dcde34..a62194493c71 100644 --- a/science/ghmm/pkg-descr +++ b/science/ghmm/pkg-descr @@ -3,5 +3,3 @@ with additional Python bindings implementing a wide range of types of Hidden Markov Models and algorithms: discrete, continous emissions, basic training, HMM clustering, HMM mixtures. - -WWW: http://ghmm.sourceforge.net/ diff --git a/science/gnudatalanguage/pkg-descr b/science/gnudatalanguage/pkg-descr index e12f56ebac55..3bac09c0db0c 100644 --- a/science/gnudatalanguage/pkg-descr +++ b/science/gnudatalanguage/pkg-descr @@ -5,5 +5,3 @@ disciplines as astronomy, geosciences and medical imaging. IDL is a registered trademark of Harris Geospatial Solutions. PV-WAVE is a product of Rogue Wave Software. - -WWW: https://github.com/gnudatalanguage/gdl diff --git a/science/gpaw-setups/pkg-descr b/science/gpaw-setups/pkg-descr index e8778d2f6f81..e6c2f77e4d46 100644 --- a/science/gpaw-setups/pkg-descr +++ b/science/gpaw-setups/pkg-descr @@ -6,5 +6,3 @@ files. This package installs the setups into the default location, $(PREFIX)/share/gpaw-setups. You can use the GPAW_SETUP_PATH environment variable with py-gpaw to override this default location. - -WWW: https://wiki.fysik.dtu.dk/gpaw/setups/setups.html diff --git a/science/gramps/pkg-descr b/science/gramps/pkg-descr index 22bf990d6819..687d732db697 100644 --- a/science/gramps/pkg-descr +++ b/science/gramps/pkg-descr @@ -11,5 +11,3 @@ genealogists. It is a community project, created, developed and governed by genealogists. It is written in Python, using a GTK3 interface. - -WWW: https://gramps-project.org/ diff --git a/science/grib_api/pkg-descr b/science/grib_api/pkg-descr index 2bd849ea54f2..0810a769b455 100644 --- a/science/grib_api/pkg-descr +++ b/science/grib_api/pkg-descr @@ -2,5 +2,3 @@ The ECMWF GRIB API is an application program interface accessible from C, FORTRAN and Python programs developed for encoding and decoding WMO FM-92 GRIB edition 1 and edition 2 messages. A useful set of command line tools is also provided to give quick access to GRIB messages. - -WWW: https://confluence.ecmwf.int/display/GRIB diff --git a/science/gromacs/pkg-descr b/science/gromacs/pkg-descr index 7bfd37964780..b0284906dd5e 100644 --- a/science/gromacs/pkg-descr +++ b/science/gromacs/pkg-descr @@ -1,5 +1,3 @@ GROMACS is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles. - -WWW: https://www.gromacs.org/ diff --git a/science/gsmc/pkg-descr b/science/gsmc/pkg-descr index 164c43a287de..cae8d4fc3bf0 100644 --- a/science/gsmc/pkg-descr +++ b/science/gsmc/pkg-descr @@ -1,5 +1,3 @@ A program for doing calculation on Smith Chart, similar in functionality to xsmc but with a simpler user interface; written with GNU/GTK library and released under GNU/GPL. Written by Lapo Pieri IK5NAX - -WWW: http://www.qsl.net/ik5nax diff --git a/science/gtamsanalyzer/pkg-descr b/science/gtamsanalyzer/pkg-descr index b5eb5698bae4..66b970036321 100644 --- a/science/gtamsanalyzer/pkg-descr +++ b/science/gtamsanalyzer/pkg-descr @@ -7,5 +7,3 @@ range of tools for applying themes to texts and identifying patterns of themes within and between texts. LICENSE: GPL2 - -WWW: http://tamsys.sourceforge.net/gtams/ diff --git a/science/h5utils/pkg-descr b/science/h5utils/pkg-descr index 26211f0d71f8..78606addb69c 100644 --- a/science/h5utils/pkg-descr +++ b/science/h5utils/pkg-descr @@ -5,5 +5,3 @@ Besides providing a simple tool for batch visualization as PNG images, h5utils also includes programs to convert HDF5 datasets into the formats required by other free visualization software (e.g. plain text, Vis5d, and VTK). - -WWW: https://github.com/stevengj/h5utils diff --git a/science/h5z-zfp/pkg-descr b/science/h5z-zfp/pkg-descr index 9fb5e804cfef..678fc6f45723 100644 --- a/science/h5z-zfp/pkg-descr +++ b/science/h5z-zfp/pkg-descr @@ -6,5 +6,3 @@ data chunked in 1, 2 or 3 dimensions. The filter will function on datasets of more than 3 dimensions, albiet at the probable expense of compression performance, as long as the chunking is such that no more than 3 dimensions of a chunk are non-unity. - -WWW: https://h5z-zfp.readthedocs.io/en/latest/ diff --git a/science/harminv/pkg-descr b/science/harminv/pkg-descr index d4e201b57f31..8b18c9878d36 100644 --- a/science/harminv/pkg-descr +++ b/science/harminv/pkg-descr @@ -3,5 +3,3 @@ of harmonic inversion - given a discrete-time, finite-length signal that consists of a sum of finitely-many sinusoids (possibly exponentially decaying) in a given bandwidth, it determines the frequencies, decay constants, amplitudes, and phases of those sinusoids. - -WWW: http://ab-initio.mit.edu/wiki/index.php/Harminv diff --git a/science/hdf/pkg-descr b/science/hdf/pkg-descr index c49f6bb60ae5..31226f04054e 100644 --- a/science/hdf/pkg-descr +++ b/science/hdf/pkg-descr @@ -15,5 +15,3 @@ and knowledge to be incorporated into the HDF product when appropriate. It also permits users and organizations without adequate technology resources to use a sophisticated and robust data management tool for no charge. - -WWW: http://www.hdfgroup.org/products/hdf4/ diff --git a/science/hdf5-110/pkg-descr b/science/hdf5-110/pkg-descr index 157b34c18263..26df97155e36 100644 --- a/science/hdf5-110/pkg-descr +++ b/science/hdf5-110/pkg-descr @@ -14,5 +14,3 @@ HDF5 includes the following improvements: and applications. Note: this is a legacy version, the latest is available as science/hdf5. - -WWW: https://www.hdfgroup.org/ diff --git a/science/hdf5-18/pkg-descr b/science/hdf5-18/pkg-descr index eaa0c6ee3ea5..eeb543d7457e 100644 --- a/science/hdf5-18/pkg-descr +++ b/science/hdf5-18/pkg-descr @@ -16,5 +16,3 @@ HDF5 includes the following improvements: Note: two releases of HDF5 are available. HDF5-1.10 can read files created with earlier releases, but earlier releases such as HDF5-1.8 may not be able to read HDF5-1.10 files. If you need the latest, please see the port science/hdf5. - -WWW: http://www.hdfgroup.org/HDF5/ diff --git a/science/hdf5/pkg-descr b/science/hdf5/pkg-descr index b272ebbb0639..a3f64fcc8f13 100644 --- a/science/hdf5/pkg-descr +++ b/science/hdf5/pkg-descr @@ -12,5 +12,3 @@ HDF5 includes the following improvements: - A simpler, better-engineered library and API, with improved support for parallel I/O, threads, and other requirements imposed by modern systems and applications. - -WWW: https://www.hdfgroup.org/ diff --git a/science/healpix/pkg-descr b/science/healpix/pkg-descr index bcfd06171a30..6901d5a5a808 100644 --- a/science/healpix/pkg-descr +++ b/science/healpix/pkg-descr @@ -2,5 +2,3 @@ HEALPix is an acronym for Hierarchical Equal Area isoLatitude Pixelization of a sphere. As suggested in the name, this pixelization produces a subdivision of a spherical surface in which each pixel covers the same surface area as every other pixel. - -WWW: https://healpix.jpl.nasa.gov/ diff --git a/science/helfem/pkg-descr b/science/helfem/pkg-descr index 85e68f749413..a4492c533343 100644 --- a/science/helfem/pkg-descr +++ b/science/helfem/pkg-descr @@ -3,5 +3,3 @@ diatomic molecules at the Hartree-Fock or density-functional levels of theory. Hundreds of functionals at the local spin density approximation (LDA), generalized gradient approximation (GGA), and meta-GGA levels of theory are supported. - -WWW: https://github.com/susilehtola/HelFEM diff --git a/science/hepmc3/pkg-descr b/science/hepmc3/pkg-descr index cf3e57904c9b..8a3321c536a7 100644 --- a/science/hepmc3/pkg-descr +++ b/science/hepmc3/pkg-descr @@ -4,5 +4,3 @@ by M. Dobbs and J.B. Hansen (Comput. Phys. Commun. 134 (2001) 41). Since the first implementation, the package has undergone several modifications and in particular, the latest HepMC3 series is a completely new rewrite using currently available C++11 techniques. - -WWW: http://hepmc.web.cern.ch/hepmc/ diff --git a/science/highfive/pkg-descr b/science/highfive/pkg-descr index 66d9d8026b18..a5b8035f8901 100644 --- a/science/highfive/pkg-descr +++ b/science/highfive/pkg-descr @@ -4,5 +4,3 @@ HighFive supports STL vector/string, Boost::UBLAS and Boost::Multi-array. It handles C++ from/to HDF5 automatic type mapping. HighFive does not require an additional library and supports both HDF5 thread safety and Parallel HDF5 (contrary to the official hdf5 cpp). - -WWW: https://github.com/BlueBrain/HighFive diff --git a/science/hypre/pkg-descr b/science/hypre/pkg-descr index ac2c88e9ef94..134de4024731 100644 --- a/science/hypre/pkg-descr +++ b/science/hypre/pkg-descr @@ -3,5 +3,3 @@ HYPRE: Scalable Linear Solvers and Multigrid Methods HYPRE is a library of high performance preconditioners and solvers featuring multigrid methods for the solution of large, sparse linear systems of equations on massively parallel computers. - -WWW: https://computing.llnl.gov/projects/hypre-scalable-linear-solvers-multigrid-methods diff --git a/science/iboview/pkg-descr b/science/iboview/pkg-descr index 03fd8e0cd427..83638cffd53e 100644 --- a/science/iboview/pkg-descr +++ b/science/iboview/pkg-descr @@ -3,5 +3,3 @@ Program for analyzing molecular electronic structure Iboview can visualize electronic structure from first-principles DFT, in terms of intuitive concepts (partial charges, bond orders, bond orbitals), even in systems with complex or unusual bonding. - -WWW: http://www.iboview.org/ diff --git a/science/isaac-cfd/pkg-descr b/science/isaac-cfd/pkg-descr index 5b08371acad3..20cdbfcb6dae 100644 --- a/science/isaac-cfd/pkg-descr +++ b/science/isaac-cfd/pkg-descr @@ -9,5 +9,3 @@ ISAAC was designed to test turbulence models. Various two equation turbulence models, explicit algebraic Reynolds stress models, and full differential Reynolds stress models are implemented in ISAAC. Several test cases are documented in the User's Guide. - -WWW: http://isaac-cfd.sourceforge.net/ diff --git a/science/jdftx/pkg-descr b/science/jdftx/pkg-descr index 85aa1ad6c24b..054a0e9221b3 100644 --- a/science/jdftx/pkg-descr +++ b/science/jdftx/pkg-descr @@ -10,5 +10,3 @@ pseudopotentials and comes pre-installed with an opens-ource library for each. With truncated Coulomb interactions [27], JDFTx enables accurate calculations of systems of any dimensionality from 0 to 3: molecules, wires, slabs/2D materials and bulk. - -WWW: http://jdftx.org/ diff --git a/science/jmol/pkg-descr b/science/jmol/pkg-descr index 83dc13c3d347..7ad238d31baa 100644 --- a/science/jmol/pkg-descr +++ b/science/jmol/pkg-descr @@ -12,5 +12,4 @@ interactive animation and linear morphing. Jmol interfaces well with JSpecView for spectroscopy, JSME for 2D->3D conversion, POV-Ray for images, and CAD programs for 3D printing (VRML export). -WWW: https://sourceforge.net/projects/jmol/ -WWW: http://jsmol.sourceforge.net/ +See also: https://sourceforge.net/projects/jmol/ diff --git a/science/jstrack/pkg-descr b/science/jstrack/pkg-descr index a9d53b110dd7..cbd1dc78d812 100644 --- a/science/jstrack/pkg-descr +++ b/science/jstrack/pkg-descr @@ -3,5 +3,3 @@ hits from tropical systems (currently only in the Tropical Atlantic). It's intended to display the NHC/TPC data and give you what you need to make decisions, etc. It does NOT, nor will it ever, attempt to do any forecasting on its own -- I leave that to the gurus at the NHC/TPC. - -WWW: http://www.jstrack.org/jstrack/ diff --git a/science/kalzium/pkg-descr b/science/kalzium/pkg-descr index 1c4c89f1604a..b08be41ee6c0 100644 --- a/science/kalzium/pkg-descr +++ b/science/kalzium/pkg-descr @@ -17,5 +17,3 @@ FEATURES - Filetype conversion for different types of chemical programs. - Tool to produce a comprehesive list of all risk and safety statements. - -WWW: http://www.kde.org/applications/education/kalzium diff --git a/science/kim-api/pkg-descr b/science/kim-api/pkg-descr index 4f8d57a2c0b3..3e95710ef7cc 100644 --- a/science/kim-api/pkg-descr +++ b/science/kim-api/pkg-descr @@ -6,5 +6,3 @@ KIM application programming interface (API) work seamlessly with major simulation codes that have adopted the KIM API standard. You may also want to install the OpenKIM models package: openkim-models. - -WWW: https://openkim.org/ diff --git a/science/kplib/pkg-descr b/science/kplib/pkg-descr index 85bac397b280..7e8beca11825 100644 --- a/science/kplib/pkg-descr +++ b/science/kplib/pkg-descr @@ -3,5 +3,3 @@ Monkhorst-Pack k-points grid. It can be imported into electronic-structure packages as a generator of efficient generalized k-point grids, or be integrated into user scripts through the python interface. - -WWW: https://gitlab.com/muellergroup/kplib diff --git a/science/kst2/pkg-descr b/science/kst2/pkg-descr index 64988c0735ef..5d322e519685 100644 --- a/science/kst2/pkg-descr +++ b/science/kst2/pkg-descr @@ -16,5 +16,3 @@ Features of Kst include: - Powerful graphical user interface. - Support for several popular data formats. - Extended annotation objects similar to vector graphics applications. - -WWW: https://kst-plot.kde.org diff --git a/science/lammps/pkg-descr b/science/lammps/pkg-descr index 30f08f3087c9..209abd3af3c7 100644 --- a/science/lammps/pkg-descr +++ b/science/lammps/pkg-descr @@ -12,5 +12,3 @@ and a spatial-decomposition of the simulation domain. Many of its models have versions that provide accelerated performance on CPUs, GPUs, and Intel Xeon Phis. The code is designed to be easy to modify or extend with new functionality. - -WWW: https://lammps.sandia.gov/ diff --git a/science/lamprop/pkg-descr b/science/lamprop/pkg-descr index e4729a27c88d..e3b2dbbd9768 100644 --- a/science/lamprop/pkg-descr +++ b/science/lamprop/pkg-descr @@ -4,5 +4,3 @@ fiber-reinforced composite laminates. It calculates - thermal properties CTE_x and CTE_y - physical properties like density and laminate thickness - stiffness and compliance matrices (ABD and abd) - -WWW: https://rsmith.home.xs4all.nl/software/lamprop.html diff --git a/science/latte/pkg-descr b/science/latte/pkg-descr index 9508cb84585a..dfad53080a28 100644 --- a/science/latte/pkg-descr +++ b/science/latte/pkg-descr @@ -8,5 +8,3 @@ Features: * Solves the electronic structure of the system. * Several solvers such as SP2, Truncated SP2, Chebyshev polynomial expansion, etc. - -WWW: https://github.com/lanl/LATTE diff --git a/science/libaec/pkg-descr b/science/libaec/pkg-descr index a06d40384bef..c7ee2018e871 100644 --- a/science/libaec/pkg-descr +++ b/science/libaec/pkg-descr @@ -13,5 +13,3 @@ SZIP's shared library libsz.so* with libaec.so* and libsz.so* from libaec. Code which is dynamically linked with SZIP such as HDF5 should continue to work with libaec. No re-compilation required. HDF5 files which contain SZIP encoded data can be decoded by HDF5 using libaec and vice versa. - -WWW: https://gitlab.dkrz.de/k202009/libaec diff --git a/science/libccp4/pkg-descr b/science/libccp4/pkg-descr index 6b560a6582e1..8e24c34b4c17 100644 --- a/science/libccp4/pkg-descr +++ b/science/libccp4/pkg-descr @@ -8,5 +8,3 @@ researcher community, embracing academic, not for profit, and for profit research. CCP4 aims to play a key role in the education and training of scientists in experimental structural biology. It encourages the wide dissemination of new ideas, techniques and practice. - -WWW: https://www.ccp4.ac.uk/ diff --git a/science/libcint/pkg-descr b/science/libcint/pkg-descr index 98648736df2f..ad3422f5fa88 100644 --- a/science/libcint/pkg-descr +++ b/science/libcint/pkg-descr @@ -1,5 +1,3 @@ libcint is an open source library for analytical Gaussian integrals. It provides C/Fortran API to evaluate one-electron/two-electron integrals for Cartesian/real-spheric/spinor Gaussian type functions. - -WWW: https://github.com/sunqm/libcint diff --git a/science/libctl/pkg-descr b/science/libctl/pkg-descr index 5ff404d14a9e..b584066522e4 100644 --- a/science/libctl/pkg-descr +++ b/science/libctl/pkg-descr @@ -10,5 +10,3 @@ The "ctl" in "libctl" stands for Control Language (by convention, libctl control files end with ".ctl" and are referred to as ctl files). Thus, libctl is the Control Language Library (where the "lib" prefix follows the Unix idiom). - -WWW: https://libctl.readthedocs.io/en/latest/ diff --git a/science/libecpint/pkg-descr b/science/libecpint/pkg-descr index 99e385a1f9cf..c61897827233 100644 --- a/science/libecpint/pkg-descr +++ b/science/libecpint/pkg-descr @@ -3,5 +3,3 @@ ab initio effective core potentials, using a mixture of generated, recursive code and Gauss-Chebyshev quadrature. It is designed to be standalone and generic, and is now in its first stable release. If you experience any problems please raise an issue here; contributions and suggestions are also welcome. - -WWW: https://github.com/robashaw/libecpint diff --git a/science/libefp/pkg-descr b/science/libefp/pkg-descr index ba012a9ebd87..cd28da0f9008 100644 --- a/science/libefp/pkg-descr +++ b/science/libefp/pkg-descr @@ -5,5 +5,3 @@ electronic structure methodologies designed for accurate simulations in the gas phase to condensed phases via QM/EFP. LIBEFP is designed to give developers of quantum chemistry software an easy way to add EFP support to their favourite package. - -WWW: https://libefp.github.io diff --git a/science/libgeodecomp/pkg-descr b/science/libgeodecomp/pkg-descr index 966abd2dabd9..28aaf8be6dc8 100644 --- a/science/libgeodecomp/pkg-descr +++ b/science/libgeodecomp/pkg-descr @@ -6,5 +6,3 @@ codes by essentially taking over the parallel programming: it handles both, the parallelization itself and parameter tuning. This enables scientists to focus on their simulation code, rather than the technical details of the parallel computer. - -WWW: http://www.libgeodecomp.org/ diff --git a/science/libgetar/pkg-descr b/science/libgetar/pkg-descr index 8739c7f63419..78c03ed49ab2 100644 --- a/science/libgetar/pkg-descr +++ b/science/libgetar/pkg-descr @@ -1,5 +1,3 @@ libgetar is a library to read and write GEneric Trajectory ARchives, a binary data format designed for efficient, extensible storage of trajectory data. - -WWW: https://github.com/glotzerlab/libgetar diff --git a/science/libghemical/pkg-descr b/science/libghemical/pkg-descr index f5db112e5fb5..8969ac000075 100644 --- a/science/libghemical/pkg-descr +++ b/science/libghemical/pkg-descr @@ -1,3 +1 @@ libghemical is a support library packages for biology/ghemical - -WWW: https://www.bioinformatics.org/ghemical/ghemical/index.html diff --git a/science/libgridxc/pkg-descr b/science/libgridxc/pkg-descr index 81fe9fa106e4..239ed9fd201d 100644 --- a/science/libgridxc/pkg-descr +++ b/science/libgridxc/pkg-descr @@ -3,5 +3,3 @@ spherical (i.e. an atom) or periodic systems. It is based on SiestaXC. The project is based on the SiestaXC code, and eventually will produce a package to be included in the Electronic Structure Library. - -WWW: https://gitlab.com/siesta-project/libraries/libgridxc diff --git a/science/libint/pkg-descr b/science/libint/pkg-descr index f2ef11be71d4..5525bde0a693 100644 --- a/science/libint/pkg-descr +++ b/science/libint/pkg-descr @@ -1,5 +1,3 @@ Libint is a library for evaluating ERI (electron replusion integral) over Cartesian Gaussian fuctions for modern atomic and molecular theory; esp. for science/mpqc and science/psi3. - -WWW: https://github.com/evaleev/libint diff --git a/science/libint2/pkg-descr b/science/libint2/pkg-descr index 88b8efb22cb3..69589c03bfdc 100644 --- a/science/libint2/pkg-descr +++ b/science/libint2/pkg-descr @@ -1,4 +1,2 @@ Libint is a library for evaluating ERI (electron replusion integral) over Cartesian Gaussian fuctions for modern atomic and molecular theory. - -WWW: https://github.com/evaleev/libint diff --git a/science/libkml/pkg-descr b/science/libkml/pkg-descr index d7ad8c5efd88..b7e8595490bf 100644 --- a/science/libkml/pkg-descr +++ b/science/libkml/pkg-descr @@ -4,5 +4,3 @@ several utility libraries for working with other formats. All of original documentation written by google is imported into "wiki" branch: https://github.com/libkml/libkml/tree/wiki - -WWW: https://github.com/libkml/libkml diff --git a/science/liblinear/pkg-descr b/science/liblinear/pkg-descr index fbf26fa3b5ff..482d7909c26f 100644 --- a/science/liblinear/pkg-descr +++ b/science/liblinear/pkg-descr @@ -16,5 +16,3 @@ Main features of LIBLINEAR include: - Probability estimates (logistic regression only) - Weights for unbalanced data - MATLAB/Octave, Java, Python, Ruby interfaces - -WWW: https://www.csie.ntu.edu.tw/~cjlin/liblinear/ diff --git a/science/libmbd/pkg-descr b/science/libmbd/pkg-descr index 53b20afd6e13..ce5ad0db0fda 100644 --- a/science/libmbd/pkg-descr +++ b/science/libmbd/pkg-descr @@ -6,5 +6,3 @@ implementation, with support for analytical gradients and distributed parallelism, and additional functionality beyond the MBD method itself. It provides a low-level and a high-level Fortran API, as well as a C API. Furthermore, Python bindings to the C API are provided. - -WWW: https://github.com/libmbd/libmbd diff --git a/science/libmsym/pkg-descr b/science/libmsym/pkg-descr index 6a9a2b59e1d1..42416f16a5c7 100644 --- a/science/libmsym/pkg-descr +++ b/science/libmsym/pkg-descr @@ -9,5 +9,3 @@ Features: * Generate SALCs of real spherical harmonics with any angular momentum for point groups with real characters (Ci, Cs, Cnv, Dn, Dnh, Dnd, Td, O, Oh, I and Ih), as well as symmetrize orbitals, determine partner functions etc. - -WWW: https://github.com/mcodev31/libmsym diff --git a/science/libnegf/pkg-descr b/science/libnegf/pkg-descr index d30feef9b7da..550afa105f4e 100644 --- a/science/libnegf/pkg-descr +++ b/science/libnegf/pkg-descr @@ -3,5 +3,3 @@ libNEGF is a general library for Non Equilibrium Green's Functions. With libNEGF you can calculate Equilibrium and Non Equilibrium Green's Function in open systems and related quantities, within an efficient sparse iterative scheme. - -WWW: https://github.com/libnegf/libnegf diff --git a/science/liboglappth/pkg-descr b/science/liboglappth/pkg-descr index 45cdb4682a1d..60028ab47d53 100644 --- a/science/liboglappth/pkg-descr +++ b/science/liboglappth/pkg-descr @@ -2,5 +2,3 @@ libghemical is a support library packages for science/ghemical This is for the OpenGL stuff. See also: http://www.bioinformatics.org/pipermail/ghemical-devel/2007-September/000688.html - -WWW: http://www.uku.fi/~thassine/projects/ghemical/ diff --git a/science/libquantum/pkg-descr b/science/libquantum/pkg-descr index ef782d7286d0..2b965ed08322 100644 --- a/science/libquantum/pkg-descr +++ b/science/libquantum/pkg-descr @@ -3,5 +3,3 @@ mechanics, with a special focus laid to quantum computing. It started as a pure quantum computer simulator, but support for general quantum simulation has been recently added. - -WWW: http://www.libquantum.de/ diff --git a/science/libssm/pkg-descr b/science/libssm/pkg-descr index efeb57d282bf..a838cc28b34a 100644 --- a/science/libssm/pkg-descr +++ b/science/libssm/pkg-descr @@ -5,5 +5,3 @@ The library implements the SSM algorithm of protein structure comparison in three dimensions, which includes an original procedure of matching graphs built on the protein's secondary-structure elements, followed by an iterative three-dimensional alignment of protein backbone Calpha atoms. - -WWW: https://launchpad.net/ssm diff --git a/science/libsvm-python/pkg-descr b/science/libsvm-python/pkg-descr index 77a29916f846..a9a052e0ac9e 100644 --- a/science/libsvm-python/pkg-descr +++ b/science/libsvm-python/pkg-descr @@ -1,3 +1 @@ This slave port adds Python interface to LIBSVM. - -WWW: http://www.csie.ntu.edu.tw/~cjlin/libsvm/ diff --git a/science/libsvm/pkg-descr b/science/libsvm/pkg-descr index 443f6a2f1327..5ec39b4db79f 100644 --- a/science/libsvm/pkg-descr +++ b/science/libsvm/pkg-descr @@ -17,5 +17,3 @@ own programs. Main features of LIBSVM include It's also included in some learning environments: YALE and PCP. * Automatic model selection which can generate contour of cross valiation accuracy. - -WWW: http://www.csie.ntu.edu.tw/~cjlin/libsvm/ diff --git a/science/libtensorflow1/pkg-descr b/science/libtensorflow1/pkg-descr index 7496c294f72a..0d5fe99672f4 100644 --- a/science/libtensorflow1/pkg-descr +++ b/science/libtensorflow1/pkg-descr @@ -5,5 +5,3 @@ build and deploy ML-powered applications. The TensorFlow C API is typically a requirement of TensorFlow APIs in other languages such as Go and Rust. This is version 1 of the API, which is deprecated but still widely used. - -WWW: https://www.tensorflow.org/install/lang_c diff --git a/science/libvdwxc/pkg-descr b/science/libvdwxc/pkg-descr index 285bcf1bc298..42a7ed12a23c 100644 --- a/science/libvdwxc/pkg-descr +++ b/science/libvdwxc/pkg-descr @@ -3,5 +3,3 @@ functional theory (DFT) codes, to enable the calculation of exchange and correlation energies for van der Waals density functionals (vdW-DF). libvdwxc evaluates correlation energy and potential using a convolution in Fourier space using the method by Roman-Perez and Soler. - -WWW: https://libvdwxc.org/ diff --git a/science/libxc/pkg-descr b/science/libxc/pkg-descr index 2d3ad60536c7..af883071185e 100644 --- a/science/libxc/pkg-descr +++ b/science/libxc/pkg-descr @@ -5,5 +5,3 @@ and also other codes. In libxc you can find different types of functionals: LDA, GGA, hybrids, and mGGA (experimental). - -WWW: https://www.tddft.org/programs/libxc/ diff --git a/science/liggghts/pkg-descr b/science/liggghts/pkg-descr index d1f50855ddd8..ea7cdf610b9b 100644 --- a/science/liggghts/pkg-descr +++ b/science/liggghts/pkg-descr @@ -17,5 +17,3 @@ comprise: * Improved particle insertion based on surface and volume meshes * A "template" mechanism to account for particle non-uniformity * More features added in the meantime and upcoming, see here. - -WWW: https://www.cfdem.com/liggghts-open-source-discrete-element-method-particle-simulation-code diff --git a/science/linux-zotero/pkg-descr b/science/linux-zotero/pkg-descr index 3394067edb80..ccb6cd37f9ac 100644 --- a/science/linux-zotero/pkg-descr +++ b/science/linux-zotero/pkg-descr @@ -1,4 +1,2 @@ Zotero is a reference management software to manage bibliographic data and related research materials. - -WWW: https://www.zotero.org/ diff --git a/science/luscus/pkg-descr b/science/luscus/pkg-descr index 6fe12368f07c..8763ce74d127 100644 --- a/science/luscus/pkg-descr +++ b/science/luscus/pkg-descr @@ -7,5 +7,3 @@ rendered in order to point out a geometrical feature or a physical quantity. The program is developed as a graphical interface for MOLCAS program package, however it's adaptive nature makes possible using luscus with other computational program packages and chemical formats. - -WWW: https://sourceforge.net/projects/luscus/ diff --git a/science/madness/pkg-descr b/science/madness/pkg-descr index c517654a06f4..5148a8df3d92 100644 --- a/science/madness/pkg-descr +++ b/science/madness/pkg-descr @@ -10,5 +10,3 @@ high-level environment for composing and solving numerical problems in many (1-6+) dimensions. Finally, built upon the numerical tools are new applications with initial focus upon chemistry, atomic and molecular physics, material science, and nuclear structure. - -WWW: https://github.com/m-a-d-n-e-s-s/madness diff --git a/science/maeparser/pkg-descr b/science/maeparser/pkg-descr index 7c9ca10ddc98..5a07dac6de9a 100644 --- a/science/maeparser/pkg-descr +++ b/science/maeparser/pkg-descr @@ -3,5 +3,3 @@ maeparser is a parser for Schrodinger Maestro files. Structure files (.mae,.maegz,.mae.gz) can contain multiple structures delimited by "f_m_ct". See MaeConstants.hpp for standard block and property names. - -WWW: https://github.com/schrodinger/maeparser diff --git a/science/massxpert/pkg-descr b/science/massxpert/pkg-descr index 835d908097ec..ce32586d6111 100644 --- a/science/massxpert/pkg-descr +++ b/science/massxpert/pkg-descr @@ -16,5 +16,3 @@ taking into account monomer modifications if polymer is a protein); to another (using a dictionary, like between the 1-letter code and the 3-letter code of proteins) 2) conversion of number format according to any localized number format 3) sort mass lists. - -WWW: http://www.msxpertsuite.org diff --git a/science/mbdyn/pkg-descr b/science/mbdyn/pkg-descr index 68a8e27e7369..04956bc2fbaa 100644 --- a/science/mbdyn/pkg-descr +++ b/science/mbdyn/pkg-descr @@ -7,5 +7,3 @@ o a complete out-of-the-box ``bells and whistles'' GUI for solid modeling o a commercial tool o a completely supported software - -WWW: https://www.mbdyn.org/ diff --git a/science/mcstas-comps/pkg-descr b/science/mcstas-comps/pkg-descr index d2717511dfa4..5f215470317e 100644 --- a/science/mcstas-comps/pkg-descr +++ b/science/mcstas-comps/pkg-descr @@ -5,5 +5,3 @@ using a ray-tracing formalism. Currently the main use of McStas is in the field of instrument design. This port contains the McStas component library. - -WWW: http://www.mcstas.org diff --git a/science/mcstas/pkg-descr b/science/mcstas/pkg-descr index 024aa0d7ff12..f974bb34c4fc 100644 --- a/science/mcstas/pkg-descr +++ b/science/mcstas/pkg-descr @@ -3,5 +3,3 @@ McStas - Monte Carlo ray tracing simulations of neutron experiments. McStas is a tool for simulating neutron instrumentation and experiments using a ray-tracing formalism. Currently the main use of McStas is in the field of instrument design. - -WWW: http://www.mcstas.org diff --git a/science/mctc-lib/pkg-descr b/science/mctc-lib/pkg-descr index ba7a357e5eb2..594d120f0682 100644 --- a/science/mctc-lib/pkg-descr +++ b/science/mctc-lib/pkg-descr @@ -2,5 +2,3 @@ Common tool chain for working with molecular structure data in various applications. This library provides a unified way to perform operations on molecular structure data, like reading and writing to common geometry file formats. - -WWW: https://grimme-lab.github.io/mctc-lib/ diff --git a/science/mcxtrace-comps/pkg-descr b/science/mcxtrace-comps/pkg-descr index 1e610ce4ee5c..b96d7bf356f6 100644 --- a/science/mcxtrace-comps/pkg-descr +++ b/science/mcxtrace-comps/pkg-descr @@ -7,5 +7,3 @@ various other uses have been found, for instance for designing X-ray telescopes or for laboratory sources. This port contains the McXtrace component library. - -WWW: http://www.mcxtrace.org diff --git a/science/mcxtrace/pkg-descr b/science/mcxtrace/pkg-descr index 3c498ca0e2df..ae182d0274d1 100644 --- a/science/mcxtrace/pkg-descr +++ b/science/mcxtrace/pkg-descr @@ -5,5 +5,3 @@ ray-tracing formalism. Currently the main use of McXtrace is in the field of synchrotron beamline instrumentation design, but various other uses have been found, such as designing X-ray telescopes or for laboratory source-based equipment. - -WWW: http://www.mcxtrace.org diff --git a/science/mdynamix/pkg-descr b/science/mdynamix/pkg-descr index 86658ac79b03..ed569c8e8e8d 100644 --- a/science/mdynamix/pkg-descr +++ b/science/mdynamix/pkg-descr @@ -12,5 +12,3 @@ parallel execution, in the latter case the MPI parallel environment is required. From v.5.1 possibility for taking into account quantum motion of nuclei using Path Integral approach is implemented. Expanded ensemble mode of simulations for calculation of solvation free energies is added in v.5.2. - -WWW: http://www.fos.su.se/~sasha/mdynamix/ diff --git a/science/medit/pkg-descr b/science/medit/pkg-descr index fd2c28b7b77e..825f151febb4 100644 --- a/science/medit/pkg-descr +++ b/science/medit/pkg-descr @@ -5,5 +5,3 @@ It is intended to display computation results (in mechanics of the solids or fluids, thermics, electromagnetism, etc.) on grids 2d (triangles and quadrangles), 3d (tetrahedrons or hexahedrons) or surfaces (triangles and quandrangles). - -WWW: https://www.ljll.math.upmc.fr/frey/software.html#scivis diff --git a/science/meep/pkg-descr b/science/meep/pkg-descr index e88c4276f2e5..2312594d8c4e 100644 --- a/science/meep/pkg-descr +++ b/science/meep/pkg-descr @@ -1,5 +1,3 @@ Meep is a free and open-source software package for electromagnetics simulation via the finite-difference time-domain (FDTD) method spanning a broad range of applications. - -WWW: https://github.com/NanoComp/meep diff --git a/science/metaphysicl/pkg-descr b/science/metaphysicl/pkg-descr index f33be23b8595..46d75922a75c 100644 --- a/science/metaphysicl/pkg-descr +++ b/science/metaphysicl/pkg-descr @@ -12,5 +12,3 @@ double, but which may provide more featureful output: compile time. * EquationSet, for the automatic assembly of physics equations into evaluation codes. - -WWW: https://github.com/libMesh/MetaPhysicL diff --git a/science/minc2/pkg-descr b/science/minc2/pkg-descr index 0f9ab311b196..415891c58780 100644 --- a/science/minc2/pkg-descr +++ b/science/minc2/pkg-descr @@ -1,4 +1,2 @@ MINC (Medical Imaging NetCDF) is a medical imaging data format and an associated set of tools and libraries. - -WWW: http://www.bic.mni.mcgill.ca/ServicesSoftware/MINC diff --git a/science/mmdb2/pkg-descr b/science/mmdb2/pkg-descr index 38d61524f617..4e2c512610df 100644 --- a/science/mmdb2/pkg-descr +++ b/science/mmdb2/pkg-descr @@ -11,5 +11,3 @@ symmetry mates, editing the molecular structure and more. MMDB is written by Eugene Krissinel, and is distributed as a part of the CCP4 suite. This project maintains a current stand-alone version of the library. - -WWW: https://launchpad.net/mmdb diff --git a/science/mmtf-cpp/pkg-descr b/science/mmtf-cpp/pkg-descr index d0b23bdfdd42..8d3f0cf368cc 100644 --- a/science/mmtf-cpp/pkg-descr +++ b/science/mmtf-cpp/pkg-descr @@ -2,5 +2,3 @@ mmtf is a C++ headers-only decoder/encoder library for the MMTF format. The macromolecular transmission format (MMTF) is a binary encoding of chemical and biological structures. - -WWW: https://mmtf.rcsb.org/ diff --git a/science/mol2ps/pkg-descr b/science/mol2ps/pkg-descr index 2c036e8dc3ef..85f59d663b1f 100644 --- a/science/mol2ps/pkg-descr +++ b/science/mol2ps/pkg-descr @@ -3,5 +3,3 @@ molecular structure files in different formats and generates Postscript output for 2D display. The Postscript file can then be used e.g. for creating a bitmap file, using a Postscript interpreter like Ghostscript. - -WWW: https://homepage.univie.ac.at/norbert.haider/cheminf/mol2ps.html diff --git a/science/molgif/pkg-descr b/science/molgif/pkg-descr index 2d1a3bf215b1..ae97b8dd2e9a 100644 --- a/science/molgif/pkg-descr +++ b/science/molgif/pkg-descr @@ -1,5 +1,3 @@ Molgif is an easy-to-use tool for creating GIF animations of molecules. Thanks to the widespread support of GIF file format, animations can be easily embedded into presentations, websites, wikipedia, and so forth. - -WWW: https://github.com/ilyak/molgif diff --git a/science/molscript/pkg-descr b/science/molscript/pkg-descr index 98a26c387bf5..facb4a7e9ca5 100644 --- a/science/molscript/pkg-descr +++ b/science/molscript/pkg-descr @@ -3,5 +3,3 @@ in both schematic and detailed representations. Output formats: PostScript, Raster3D, VRML 2.0, interactive OpenGL, SGI (aka RGB), JPEG, EPS, PNG, GIF. - -WWW: https://kraulis.se/MolScript/ diff --git a/science/molsketch/pkg-descr b/science/molsketch/pkg-descr index 42fe18706520..fcc79e0a16f3 100644 --- a/science/molsketch/pkg-descr +++ b/science/molsketch/pkg-descr @@ -1,4 +1,2 @@ Molsketch is a 2D molecular editing tool. Its goal is to help you draw molecules quick and easily. - -WWW: https://molsketch.sourceforge.net/ diff --git a/science/mopac/pkg-descr b/science/mopac/pkg-descr index ebe8b3e0d5c5..18229a7d331d 100644 --- a/science/mopac/pkg-descr +++ b/science/mopac/pkg-descr @@ -1,4 +1,2 @@ MOPAC7, semi-empirical (MNDO, AM1, PM3, MINDO/3) quantum-chemical calculation written by James J. P. Stewart and co-workers. - -WWW: http://bioinformatics.org/ghemical/ diff --git a/science/mpb/pkg-descr b/science/mpb/pkg-descr index 55f502002c16..cad79905f6e0 100644 --- a/science/mpb/pkg-descr +++ b/science/mpb/pkg-descr @@ -10,5 +10,3 @@ photonic crystals (a.k.a. photonic band-gap materials), but is also applicable to many other problems in optics, such as waveguides and resonator systems. (For example, it can solve for the modes of waveguides with arbitrary cross- sections.) - -WWW: https://mpb.readthedocs.io/en/latest/ diff --git a/science/mpqc/pkg-descr b/science/mpqc/pkg-descr index 9d825392aeb5..7290f6a0a7e8 100644 --- a/science/mpqc/pkg-descr +++ b/science/mpqc/pkg-descr @@ -29,5 +29,3 @@ You can also validate your mpqc binaries when you employ other settings by: (it may take few days, though) For details, please see file:///usr/local/share/doc/mpqc/hierarchy.html or http://www.mpqc.org/mpqc-html/mpqcval.html - -WWW: https://mpqc.org/ diff --git a/science/msms/pkg-descr b/science/msms/pkg-descr index e7b6f2264c74..1da765f81095 100644 --- a/science/msms/pkg-descr +++ b/science/msms/pkg-descr @@ -4,5 +4,3 @@ computed from the reduced surface. Special attention is paid to the proper handling of self-intersecting parts of the surface called singularities. This analytical model of the solvent excluded surface can be triangulated with a user specified vertex density. - -WWW: http://mgltools.scripps.edu/downloads#msms diff --git a/science/mstore/pkg-descr b/science/mstore/pkg-descr index 8edb7cc34661..253281c855d0 100644 --- a/science/mstore/pkg-descr +++ b/science/mstore/pkg-descr @@ -2,5 +2,3 @@ mstore is molecular structure store for testing. It allows to store molecular structures in computational chemistry software. - -WWW: https://github.com/grimme-lab/mstore diff --git a/science/multicharge/pkg-descr b/science/multicharge/pkg-descr index 8edb7cc34661..253281c855d0 100644 --- a/science/multicharge/pkg-descr +++ b/science/multicharge/pkg-descr @@ -2,5 +2,3 @@ mstore is molecular structure store for testing. It allows to store molecular structures in computational chemistry software. - -WWW: https://github.com/grimme-lab/mstore diff --git a/science/multiwfn/pkg-descr b/science/multiwfn/pkg-descr index b38a0dd0ff67..6f0560b3a8d6 100644 --- a/science/multiwfn/pkg-descr +++ b/science/multiwfn/pkg-descr @@ -6,5 +6,3 @@ and Mac OS platforms are supported. This port represents the GNU fortran-compatible fork of Multiwfn, which is normally using the Intel fortran (ifort). - -WWW: http://sobereva.com/multiwfn/index.html diff --git a/science/namd/pkg-descr b/science/namd/pkg-descr index 47db1bfd1a3e..9983e7d81aac 100644 --- a/science/namd/pkg-descr +++ b/science/namd/pkg-descr @@ -4,5 +4,3 @@ is often used to simulate large systems (millions of atoms). It has been developed by the collaboration of the Theoretical and Computational Biophysics Group (TCB) and the Parallel Programming Laboratory (PPL) at the University of Illinois at Urbana-Champaign. - -WWW: https://www.ks.uiuc.edu/Research/namd/ diff --git a/science/nest/pkg-descr b/science/nest/pkg-descr index 3f8c57643d73..9ced48f37887 100644 --- a/science/nest/pkg-descr +++ b/science/nest/pkg-descr @@ -9,5 +9,3 @@ NEST is ideal for networks of spiking neurons of any size, for example: * Models of network activity dynamics, e.g. laminar cortical networks or balanced random networks, * Models of learning and plasticity. - -WWW: https://www.nest-simulator.org/ diff --git a/science/netcdf-cxx/pkg-descr b/science/netcdf-cxx/pkg-descr index 492cb00b1996..172a2ece5bc1 100644 --- a/science/netcdf-cxx/pkg-descr +++ b/science/netcdf-cxx/pkg-descr @@ -5,5 +5,4 @@ data. Together, the interface, library, and format support the creation, access, and sharing of scientific data. The netCDF software was developed at the Unidata Program Center in Boulder, Colorado. -WWW: https://www.unidata.ucar.edu/software/netcdf/ -WWW: https://github.com/Unidata/netcdf-cxx4 +See also: https://github.com/Unidata/netcdf-cxx4 diff --git a/science/netcdf-fortran/pkg-descr b/science/netcdf-fortran/pkg-descr index f692eae3bdcc..920c2b6b87c6 100644 --- a/science/netcdf-fortran/pkg-descr +++ b/science/netcdf-fortran/pkg-descr @@ -5,5 +5,4 @@ data. Together, the interface, library, and format support the creation, access, and sharing of scientific data. The netCDF software was developed at the Unidata Program Center in Boulder, Colorado. -WWW: https://www.unidata.ucar.edu/software/netcdf/ -WWW: https://github.com/Unidata/netcdf-fortran +See also: https://github.com/Unidata/netcdf-fortran diff --git a/science/netcdf/pkg-descr b/science/netcdf/pkg-descr index 95ad30fe1458..c31e666d1a02 100644 --- a/science/netcdf/pkg-descr +++ b/science/netcdf/pkg-descr @@ -5,5 +5,4 @@ data. Together, the interface, library, and format support the creation, access, and sharing of scientific data. The netCDF software was developed at the Unidata Program Center in Boulder, Colorado. -WWW: https://www.unidata.ucar.edu/software/netcdf/ -WWW: https://github.com/Unidata/netcdf-c +See also: https://github.com/Unidata/netcdf-c diff --git a/science/nifticlib/pkg-descr b/science/nifticlib/pkg-descr index eee3225402ea..1d7f91bdadfa 100644 --- a/science/nifticlib/pkg-descr +++ b/science/nifticlib/pkg-descr @@ -1,5 +1,3 @@ NIfTI-1 is an Analyze-style data format, proposed by the NIfTI DFWG as a short-term measure to facilitate inter-operation of functional MRI data analysis software packages. - -WWW: http://nifti.nimh.nih.gov/ diff --git a/science/nlcglib/pkg-descr b/science/nlcglib/pkg-descr index 34bcad12d0a3..e847ddc284b1 100644 --- a/science/nlcglib/pkg-descr +++ b/science/nlcglib/pkg-descr @@ -1,4 +1,2 @@ Nlcglib is a plugin for sirius providing robust wave-function optimization to q-e-sirius. - -WWW: https://github.com/simonpintarelli/nlcglib diff --git a/science/nwchem-data/pkg-descr b/science/nwchem-data/pkg-descr index f6c97fef693d..d9ea9ef0c09e 100644 --- a/science/nwchem-data/pkg-descr +++ b/science/nwchem-data/pkg-descr @@ -2,5 +2,3 @@ The data package for NWChem, the quantum chemistry software. Data contains basis sets descriptions, pseudopotentials, various related data libraries needed for NWChem operation. - -WWW: https://nwchemgit.github.io/ diff --git a/science/nwchem/pkg-descr b/science/nwchem/pkg-descr index 25845f43848f..8880a4e67f9f 100644 --- a/science/nwchem/pkg-descr +++ b/science/nwchem/pkg-descr @@ -11,5 +11,3 @@ NWChem software can handle: * Gaussian basis functions or plane-waves * Scaling from one to thousands of processors * Properties and relativistic effects - -WWW: https://nwchemgit.github.io/ diff --git a/science/octopus/pkg-descr b/science/octopus/pkg-descr index 662559a340e7..37a1356f07ab 100644 --- a/science/octopus/pkg-descr +++ b/science/octopus/pkg-descr @@ -8,5 +8,3 @@ the pseudopotential approximation. For optimal execution performance Octopus is parallelized using MPI and OpenMP and can scale to tens of thousands of processors. It also has support for graphical processing units (GPUs) through OpenCL and CUDA. - -WWW: https://octopus-code.org/wiki/Main_Page diff --git a/science/openbabel/pkg-descr b/science/openbabel/pkg-descr index 68e3acf3559d..64924c77f4bc 100644 --- a/science/openbabel/pkg-descr +++ b/science/openbabel/pkg-descr @@ -15,5 +15,3 @@ Features currently include: * Bitvector class * Open-source/Free Software under the GNU General Public License * Cross platform (Windows, Linux, Mac OS X, SGI, Solaris, Dreamcast...) - -WWW: https://openbabel.org/wiki/Main_Page diff --git a/science/openems/pkg-descr b/science/openems/pkg-descr index 68a45a169430..acbdcdc1766d 100644 --- a/science/openems/pkg-descr +++ b/science/openems/pkg-descr @@ -4,5 +4,3 @@ Matlab or Octave are used as an easy and flexible scripting interface. It features: * fully 3D Cartesian and cylindrical coordinates graded mesh * multi-threading, SIMD (SSE) and MPI support for high speed FDTD - -WWW: https://openems.de/start/ diff --git a/science/openkim-models/pkg-descr b/science/openkim-models/pkg-descr index 997db6dddaeb..741caf95aeda 100644 --- a/science/openkim-models/pkg-descr +++ b/science/openkim-models/pkg-descr @@ -4,5 +4,3 @@ programming interface work seamlessly with major simulation codes that have adopted the KIM-API standard. This package contains the models from openkim.org. - -WWW: https://openkim.org/ diff --git a/science/openmc/pkg-descr b/science/openmc/pkg-descr index 5f83fbdea530..9b07ba26e07f 100644 --- a/science/openmc/pkg-descr +++ b/science/openmc/pkg-descr @@ -6,5 +6,3 @@ continuous-energy and multigroup transport. The continuous-energy particle interaction data is based on a native HDF5 format that can be generated from ACE files produced by NJOY. Parallelism is enabled via a hybrid MPI and OpenMP programming model. - -WWW: https://openmc.org/ diff --git a/science/openmolcas/pkg-descr b/science/openmolcas/pkg-descr index 3a31527b5097..37869f0b7aa3 100644 --- a/science/openmolcas/pkg-descr +++ b/science/openmolcas/pkg-descr @@ -2,5 +2,3 @@ OpenMolcas is a quantum chemistry software package. The key feature of OpenMolcas is the multiconfigurational approach to the electronic structure. - -WWW: https://gitlab.com/Molcas/OpenMolcas diff --git a/science/openmx/pkg-descr b/science/openmx/pkg-descr index edb2f2d3343f..f033a8e1e335 100644 --- a/science/openmx/pkg-descr +++ b/science/openmx/pkg-descr @@ -20,5 +20,3 @@ such as magnetic, dielectric, and electric transport properties. Thus, we expect that OpenMX can be a useful and powerful theoretical tool for nano-scale material sciences, leading to better and deeper understanding of complicated and useful materials based on quantum mechanics. - -WWW: http://www.openmx-square.org/ diff --git a/science/opensim-core/pkg-descr b/science/opensim-core/pkg-descr index 2fef9654e639..0d8bf7863d98 100644 --- a/science/opensim-core/pkg-descr +++ b/science/opensim-core/pkg-descr @@ -2,5 +2,3 @@ OpenSim is software that lets users develop models of musculoskeletal structures and create dynamic simulations of movement. It contains SimTK OpenSim C++ libraries and command-line applications. - -WWW: http://opensim.stanford.edu/ diff --git a/science/opensph/pkg-descr b/science/opensph/pkg-descr index 3fb67d1dfdcb..2e6b2a82cdda 100644 --- a/science/opensph/pkg-descr +++ b/science/opensph/pkg-descr @@ -3,5 +3,3 @@ space, currently specialized on simulations of asteroid impacts. The code is being developed on Astronomical Institute of Charles University in Prague. It aims to provide a fast, versatile and easily extensible SPH solver utilizing modern CPU features (SSE/AVX instruction sets). - -WWW: https://gitlab.com/sevecekp/sph diff --git a/science/opsin/pkg-descr b/science/opsin/pkg-descr index 24ddb2751426..f49b9052d4ca 100644 --- a/science/opsin/pkg-descr +++ b/science/opsin/pkg-descr @@ -2,5 +2,3 @@ OPSIN is a Java library for IUPAC name-to-structure conversion offering high recall and precision on organic chemical nomenclature. Supported outputs are SMILES, CML (Chemical Markup Language) and InChI (IUPAC International Chemical Identifier). - -WWW: https://bitbucket.org/dan2097/opsin/src/default/ diff --git a/science/orthanc-dicomweb/pkg-descr b/science/orthanc-dicomweb/pkg-descr index 5c0bc7960f51..fc6a62edd0c4 100644 --- a/science/orthanc-dicomweb/pkg-descr +++ b/science/orthanc-dicomweb/pkg-descr @@ -8,5 +8,3 @@ CRUD operations (create, read, update and delete) on the set of DICOM resources that Orthanc stores, together with commands that trigger calls to the DICOM protocol (C-Echo SCU/SCP, C-Store SCU/SCP, C-Find SCU/SCP, C-Move SCU/SCP). - -WWW: https://www.orthanc-server.com/static.php?page=dicomweb diff --git a/science/orthanc-mysql/pkg-descr b/science/orthanc-mysql/pkg-descr index d05cb690085d..de836e02bada 100644 --- a/science/orthanc-mysql/pkg-descr +++ b/science/orthanc-mysql/pkg-descr @@ -1,5 +1,3 @@ Orthanc-mysql is an Orthanc plugin that replaces the default SQLite engine of Orthanc with a MySQL back-end. The plugin is compatible with MariaDB as well. - -WWW: https://www.orthanc-server.com/static.php?page=mysql diff --git a/science/orthanc-postgresql/pkg-descr b/science/orthanc-postgresql/pkg-descr index d9a11d5e7aa9..f67a4b8e3532 100644 --- a/science/orthanc-postgresql/pkg-descr +++ b/science/orthanc-postgresql/pkg-descr @@ -1,4 +1,2 @@ Orthanc-postgresql is an Orthanc plugin that replaces the default SQLite engine of Orthanc with a PostgreSQL back-end. - -WWW: https://www.orthanc-server.com/static.php?page=postgresql diff --git a/science/orthanc-webviewer/pkg-descr b/science/orthanc-webviewer/pkg-descr index 2a9f2b17ed4e..d6c046b4fd9a 100644 --- a/science/orthanc-webviewer/pkg-descr +++ b/science/orthanc-webviewer/pkg-descr @@ -7,5 +7,3 @@ library to display medical images in Web browsers, by Chris Hafey, and GDCM (http://sourceforge.net/projects/gdcm/), an open-source implementation of the DICOM standard with advanced features for image decoding, by Mathieu Malaterre. - -WWW: https://www.orthanc-server.com/static.php?page=web-viewer diff --git a/science/orthanc/pkg-descr b/science/orthanc/pkg-descr index 9ab8479c6127..73908d92ef2c 100644 --- a/science/orthanc/pkg-descr +++ b/science/orthanc/pkg-descr @@ -19,5 +19,3 @@ Orthanc also features a plugin mechanism to add new modules that extends the core capabilities of its REST API. A Web viewer, a PostgreSQL database back-end, a MySQL database back-end, and a reference implementation of DICOMweb are currently freely available as plugins. - -WWW: https://www.orthanc-server.com/ diff --git a/science/p5-Algorithm-SVMLight/pkg-descr b/science/p5-Algorithm-SVMLight/pkg-descr index b44a3c70d691..e528bf4524ee 100644 --- a/science/p5-Algorithm-SVMLight/pkg-descr +++ b/science/p5-Algorithm-SVMLight/pkg-descr @@ -10,5 +10,3 @@ package: thousands of support vectors efficiently. -- http://svmlight.joachims.org/ - -WWW: https://metacpan.org/release/Algorithm-SVMLight diff --git a/science/p5-Chemistry-3DBuilder/pkg-descr b/science/p5-Chemistry-3DBuilder/pkg-descr index 430d52090162..9858d214502d 100644 --- a/science/p5-Chemistry-3DBuilder/pkg-descr +++ b/science/p5-Chemistry-3DBuilder/pkg-descr @@ -1,5 +1,3 @@ Perl module which generates a three-dimensional molecular structure from a connection table, such as that obtained by a 2D representation of the molecule or from a SMILES string. - -WWW: https://metacpan.org/release/Chemistry-3DBuilder diff --git a/science/p5-Chemistry-Bond-Find/pkg-descr b/science/p5-Chemistry-Bond-Find/pkg-descr index 477f65a1090b..c1b0fe465d38 100644 --- a/science/p5-Chemistry-Bond-Find/pkg-descr +++ b/science/p5-Chemistry-Bond-Find/pkg-descr @@ -1,5 +1,3 @@ Perl module which provides functions for detecting the bonds in a molecule from its 3D coordinates by using simple cutoffs, and for guessing the formal bond orders. - -WWW: https://metacpan.org/release/Chemistry-Bond-Find diff --git a/science/p5-Chemistry-Canonicalize/pkg-descr b/science/p5-Chemistry-Canonicalize/pkg-descr index c0d10038c4be..df389df752ef 100644 --- a/science/p5-Chemistry-Canonicalize/pkg-descr +++ b/science/p5-Chemistry-Canonicalize/pkg-descr @@ -1,5 +1,3 @@ Perl module which provides functions for "canonicalizing" a molecular structure; that is, to number the atoms in a unique way regardless of the input order. - -WWW: https://metacpan.org/release/Chemistry-Canonicalize diff --git a/science/p5-Chemistry-Elements/pkg-descr b/science/p5-Chemistry-Elements/pkg-descr index c7445e89d442..53a3fceb2c2b 100644 --- a/science/p5-Chemistry-Elements/pkg-descr +++ b/science/p5-Chemistry-Elements/pkg-descr @@ -1,5 +1,3 @@ Chemistry::Elements provides an easy, object-oriented way to keep track of your chemical data. Using either the atomic number, chemical symbol, or element name you can construct an Element object. - -WWW: https://metacpan.org/release/Chemistry-Elements diff --git a/science/p5-Chemistry-File-MDLMol/pkg-descr b/science/p5-Chemistry-File-MDLMol/pkg-descr index 67c356919583..d4db44416326 100644 --- a/science/p5-Chemistry-File-MDLMol/pkg-descr +++ b/science/p5-Chemistry-File-MDLMol/pkg-descr @@ -1,5 +1,3 @@ Perl module which will parse a SMARTS (SMiles ARbitrary Target Specification) string, generating a Chemistry::Pattern object. It is a file I/O driver for the PerlMol toolkit. - -WWW: https://metacpan.org/release/Chemistry-File-SMARTS diff --git a/science/p5-Chemistry-File-Mopac/pkg-descr b/science/p5-Chemistry-File-Mopac/pkg-descr index 86f991f8e00c..88d674e72293 100644 --- a/science/p5-Chemistry-File-Mopac/pkg-descr +++ b/science/p5-Chemistry-File-Mopac/pkg-descr @@ -1,3 +1 @@ MOPAC 6 input file reader/writer - -WWW: https://metacpan.org/release/Chemistry-File-Mopac diff --git a/science/p5-Chemistry-File-PDB/pkg-descr b/science/p5-Chemistry-File-PDB/pkg-descr index 2ee4dcde1418..f8cfa0f26551 100644 --- a/science/p5-Chemistry-File-PDB/pkg-descr +++ b/science/p5-Chemistry-File-PDB/pkg-descr @@ -1,5 +1,3 @@ p5-Chemistry-File-PDB reads and writes PDB files. The PDB file format is commonly used to describe proteins, particularly those stored in the Protein Data Bank(<http://www.rcsb.org/pdb/>). - -WWW: https://metacpan.org/release/Chemistry-File-PDB diff --git a/science/p5-Chemistry-File-SLN/pkg-descr b/science/p5-Chemistry-File-SLN/pkg-descr index 034b6f371638..fdbc3f59677d 100644 --- a/science/p5-Chemistry-File-SLN/pkg-descr +++ b/science/p5-Chemistry-File-SLN/pkg-descr @@ -1,3 +1 @@ SLN linear notation parser/writer - -WWW: https://metacpan.org/release/Chemistry-File-SLN diff --git a/science/p5-Chemistry-File-SMARTS/pkg-descr b/science/p5-Chemistry-File-SMARTS/pkg-descr index 67c356919583..d4db44416326 100644 --- a/science/p5-Chemistry-File-SMARTS/pkg-descr +++ b/science/p5-Chemistry-File-SMARTS/pkg-descr @@ -1,5 +1,3 @@ Perl module which will parse a SMARTS (SMiles ARbitrary Target Specification) string, generating a Chemistry::Pattern object. It is a file I/O driver for the PerlMol toolkit. - -WWW: https://metacpan.org/release/Chemistry-File-SMARTS diff --git a/science/p5-Chemistry-File-SMILES/pkg-descr b/science/p5-Chemistry-File-SMILES/pkg-descr index dd979ded82b3..71186529c6fb 100644 --- a/science/p5-Chemistry-File-SMILES/pkg-descr +++ b/science/p5-Chemistry-File-SMILES/pkg-descr @@ -1,4 +1,2 @@ Perl module which parses a SMILES (Simplified Molecular Input Line Entry Specification) string. - -WWW: https://metacpan.org/release/Chemistry-File-SMILES diff --git a/science/p5-Chemistry-File-VRML/pkg-descr b/science/p5-Chemistry-File-VRML/pkg-descr index caea6e900b2c..c0dd720f6c4f 100644 --- a/science/p5-Chemistry-File-VRML/pkg-descr +++ b/science/p5-Chemistry-File-VRML/pkg-descr @@ -1,3 +1 @@ Generate VRML models for molecules - -WWW: https://metacpan.org/release/Chemistry-File-VRML diff --git a/science/p5-Chemistry-File-XYZ/pkg-descr b/science/p5-Chemistry-File-XYZ/pkg-descr index 66f2d201b513..8df46b8f92bb 100644 --- a/science/p5-Chemistry-File-XYZ/pkg-descr +++ b/science/p5-Chemistry-File-XYZ/pkg-descr @@ -1,3 +1 @@ XYZ molecule format reader/writer - -WWW: https://metacpan.org/release/Chemistry-File-XYZ diff --git a/science/p5-Chemistry-FormulaPattern/pkg-descr b/science/p5-Chemistry-FormulaPattern/pkg-descr index f8a799608d96..070a441a6a45 100644 --- a/science/p5-Chemistry-FormulaPattern/pkg-descr +++ b/science/p5-Chemistry-FormulaPattern/pkg-descr @@ -1,3 +1 @@ Match molecule by formula - -WWW: https://metacpan.org/release/Chemistry-FormulaPattern diff --git a/science/p5-Chemistry-InternalCoords/pkg-descr b/science/p5-Chemistry-InternalCoords/pkg-descr index 8000dda56905..66ecdd8169c6 100644 --- a/science/p5-Chemistry-InternalCoords/pkg-descr +++ b/science/p5-Chemistry-InternalCoords/pkg-descr @@ -1,5 +1,3 @@ Perl module implements an object class for representing internal coordinates and provides methods for converting them to Cartesian coordinates. - -WWW: https://metacpan.org/release/Chemistry-InternalCoords diff --git a/science/p5-Chemistry-Isotope/pkg-descr b/science/p5-Chemistry-Isotope/pkg-descr index 6bb5902eb540..9311880773f8 100644 --- a/science/p5-Chemistry-Isotope/pkg-descr +++ b/science/p5-Chemistry-Isotope/pkg-descr @@ -1,3 +1 @@ Perl module which contains the exact mass data from the table of the isotopes. - -WWW: https://metacpan.org/release/Chemistry-Isotope diff --git a/science/p5-Chemistry-MacroMol/pkg-descr b/science/p5-Chemistry-MacroMol/pkg-descr index a6616ff786e7..66afccc2707d 100644 --- a/science/p5-Chemistry-MacroMol/pkg-descr +++ b/science/p5-Chemistry-MacroMol/pkg-descr @@ -4,5 +4,3 @@ consists of several "domains". For example, a protein consists of aminoacid residues, or a nucleic acid consists of bases. Therefore Chemistry::MacroMol is derived from Chemistry::Mol, with additional methods to handle the domains. - -WWW: https://metacpan.org/release/Chemistry-MacroMol diff --git a/science/p5-Chemistry-MidasPattern/pkg-descr b/science/p5-Chemistry-MidasPattern/pkg-descr index 388d1e1f51c1..dc55afb34a94 100644 --- a/science/p5-Chemistry-MidasPattern/pkg-descr +++ b/science/p5-Chemistry-MidasPattern/pkg-descr @@ -1,3 +1 @@ Select atoms in macromolecule - -WWW: https://metacpan.org/release/Chemistry-MidasPattern diff --git a/science/p5-Chemistry-Mok/pkg-descr b/science/p5-Chemistry-Mok/pkg-descr index beb2bb4379e4..a4cf37561f5d 100644 --- a/science/p5-Chemistry-Mok/pkg-descr +++ b/science/p5-Chemistry-Mok/pkg-descr @@ -1,3 +1 @@ Perl molecular awk interpreter - -WWW: https://metacpan.org/release/Chemistry-Mok diff --git a/science/p5-Chemistry-Mol/pkg-descr b/science/p5-Chemistry-Mol/pkg-descr index 3008871f45d9..f84394ac84cd 100644 --- a/science/p5-Chemistry-Mol/pkg-descr +++ b/science/p5-Chemistry-Mol/pkg-descr @@ -4,5 +4,3 @@ Chemistry::Atom, Chemistry::Bond, and Chemistry::File. They are the core modules of the PerlMol toolkit, see: http://www.perlmol.org/. - -WWW: https://metacpan.org/release/Chemistry-Mol diff --git a/science/p5-Chemistry-Pattern/pkg-descr b/science/p5-Chemistry-Pattern/pkg-descr index 13ddba21c7cc..7a585c44b51c 100644 --- a/science/p5-Chemistry-Pattern/pkg-descr +++ b/science/p5-Chemistry-Pattern/pkg-descr @@ -1,3 +1 @@ Perl module which implements basic pattern matching for molecules. - -WWW: https://metacpan.org/release/Chemistry-Pattern diff --git a/science/p5-Chemistry-Reaction/pkg-descr b/science/p5-Chemistry-Reaction/pkg-descr index e13267db2d3e..17076aea2190 100644 --- a/science/p5-Chemistry-Reaction/pkg-descr +++ b/science/p5-Chemistry-Reaction/pkg-descr @@ -1,3 +1 @@ Explicit chemical reactions - -WWW: https://metacpan.org/release/Chemistry-Reaction diff --git a/science/p5-Chemistry-Ring/pkg-descr b/science/p5-Chemistry-Ring/pkg-descr index 6bacbe88f397..2f03dffa36b1 100644 --- a/science/p5-Chemistry-Ring/pkg-descr +++ b/science/p5-Chemistry-Ring/pkg-descr @@ -1,3 +1 @@ Perl module which provides some basic methods for representing a ring. - -WWW: https://metacpan.org/release/Chemistry-Ring diff --git a/science/p5-Geo-BUFR/pkg-descr b/science/p5-Geo-BUFR/pkg-descr index 314cfb921873..2a4e11e594dd 100644 --- a/science/p5-Geo-BUFR/pkg-descr +++ b/science/p5-Geo-BUFR/pkg-descr @@ -12,5 +12,3 @@ bufrresolve.pl, bufrencode.pl, bufr_reencode.pl and bufralter.pl. See https://wiki.met.no/bufr.pm/start for examples of use. For the majority of potential users of Geo::BUFR I would expect these programs to be all that you will need Geo::BUFR for. - -WWW: https://metacpan.org/release/Geo-BUFR diff --git a/science/p5-Geo-Coordinates-Converter-iArea/pkg-descr b/science/p5-Geo-Coordinates-Converter-iArea/pkg-descr index ef683e9df083..7c9705e1bb34 100644 --- a/science/p5-Geo-Coordinates-Converter-iArea/pkg-descr +++ b/science/p5-Geo-Coordinates-Converter-iArea/pkg-descr @@ -1,3 +1 @@ Geo::Coordinates::Converter::iArea is utilities for DoCoMo iArea. - -WWW: https://metacpan.org/release/Geo-Coordinates-Converter-iArea diff --git a/science/p5-Geo-Coordinates-Converter/pkg-descr b/science/p5-Geo-Coordinates-Converter/pkg-descr index c5811da9c3fb..807992335a34 100644 --- a/science/p5-Geo-Coordinates-Converter/pkg-descr +++ b/science/p5-Geo-Coordinates-Converter/pkg-descr @@ -2,5 +2,3 @@ Geo::Coordinates::Converter is a simple converter of geo coordinates, the format and datum of geo coordinates are simply converted. when it is insufficient in the coordinate system and the format of the standard, it is possible to add it easily. - -WWW: https://metacpan.org/release/Geo-Coordinates-Converter diff --git a/science/p5-Geo-WebService-Elevation-USGS/pkg-descr b/science/p5-Geo-WebService-Elevation-USGS/pkg-descr index 85ba2a83d701..345f23abb0d0 100644 --- a/science/p5-Geo-WebService-Elevation-USGS/pkg-descr +++ b/science/p5-Geo-WebService-Elevation-USGS/pkg-descr @@ -5,5 +5,3 @@ negative. The return is typically a hash containing the data you want. Query errors are exceptions by default, though the object can be configured to signal an error by an undef response, with the error retrievable from the 'error' attribute. - -WWW: https://metacpan.org/release/Geo-WebService-Elevation-USGS diff --git a/science/p5-Mcstas-Tools/pkg-descr b/science/p5-Mcstas-Tools/pkg-descr index 713ff0006a93..97482756def7 100644 --- a/science/p5-Mcstas-Tools/pkg-descr +++ b/science/p5-Mcstas-Tools/pkg-descr @@ -16,5 +16,3 @@ mcformatgui: Front-end to mxformat to help reformat data-files (obsolescent). mcdaemon: Deamon to dynamically monitor and plot results (obsolescent). mcstas2vitess: Tool to transfer a McStas simulation to ViTESS. mcresplot: Script to help plotting resolution functions. - -WWW: http://www.mcstas.org diff --git a/science/p5-PerlMol/pkg-descr b/science/p5-PerlMol/pkg-descr index 54e3b471b500..bc10fd80d3ba 100644 --- a/science/p5-PerlMol/pkg-descr +++ b/science/p5-PerlMol/pkg-descr @@ -1,3 +1 @@ Perl modules for molecular chemistry - -WWW: https://metacpan.org/release/PerlMol diff --git a/science/p5-Physics-Unit/pkg-descr b/science/p5-Physics-Unit/pkg-descr index 3671518b4884..613bdb692610 100644 --- a/science/p5-Physics-Unit/pkg-descr +++ b/science/p5-Physics-Unit/pkg-descr @@ -2,5 +2,3 @@ Objects of class Physics::Unit define units of measurement that correspond to physical quantities. This module allows you to manipulate these units, generate new derived units from other units, and convert from one unit to another. - -WWW: https://metacpan.org/release/Physics-Unit diff --git a/science/packmol/pkg-descr b/science/packmol/pkg-descr index bbc3ca5154ae..acb1d3600884 100644 --- a/science/packmol/pkg-descr +++ b/science/packmol/pkg-descr @@ -1,5 +1,3 @@ PACKMOL creates an initial point for molecular dynamics simulations by packing molecules in defined regions of space. The packing guarantees that short range repulsive interactions do not disrupt the simulations. - -WWW: http://m3g.iqm.unicamp.br/packmol/home.shtml diff --git a/science/pagmo2/pkg-descr b/science/pagmo2/pkg-descr index 5493963a3f82..fe1fa4a5ed89 100644 --- a/science/pagmo2/pkg-descr +++ b/science/pagmo2/pkg-descr @@ -2,5 +2,3 @@ pagmo (C++) is a scientific library for massively parallel optimization. It is built around the idea of providing a unified interface to optimization algorithms and to optimization problems and to make their deployment in massively parallel environments easy. - -WWW: https://esa.github.io/pagmo2/ diff --git a/science/paje/pkg-descr b/science/paje/pkg-descr index 40d59a934b56..8ea19ee6a5a1 100644 --- a/science/paje/pkg-descr +++ b/science/paje/pkg-descr @@ -13,5 +13,3 @@ Key Features some representation LICENSE: LGPL2 or later - -WWW: http://www-id.imag.fr/Logiciels/paje/ diff --git a/science/paraview/pkg-descr b/science/paraview/pkg-descr index b7baea17fc32..8244e31c2386 100644 --- a/science/paraview/pkg-descr +++ b/science/paraview/pkg-descr @@ -1,4 +1,2 @@ ParaView is a powerful scientific visualization application, designed with the need to visualize large data sets in mind. - -WWW: https://www.paraview.org/ diff --git a/science/pastix/pkg-descr b/science/pastix/pkg-descr index 8f4702677f92..f5593b06ec32 100644 --- a/science/pastix/pkg-descr +++ b/science/pastix/pkg-descr @@ -5,5 +5,3 @@ precision (real or complex) using LLt, LDLt and LU with static pivoting (for non symmetric matrices having a symmetric pattern). This solver also provides some low-rank compression methods to reduce the memory footprint and/or the time-to-solution. - -WWW: https://solverstack.gitlabpages.inria.fr/pastix/ diff --git a/science/pcmsolver/pkg-descr b/science/pcmsolver/pkg-descr index 2de9bb41a45b..e70e5f278fdd 100644 --- a/science/pcmsolver/pkg-descr +++ b/science/pcmsolver/pkg-descr @@ -2,5 +2,3 @@ PCMSolver is a quantum chemistry library that aims to: * Provide a plug-and-play library for adding the Polarizable Continuum Model functionality to any quantum chemistry program * Create a playground for easily extending the implementation of the model - -WWW: https://github.com/PCMSolver/pcmsolver diff --git a/science/phonopy/pkg-descr b/science/phonopy/pkg-descr index 75af12838676..e4e306574830 100644 --- a/science/phonopy/pkg-descr +++ b/science/phonopy/pkg-descr @@ -16,5 +16,3 @@ The following features of phonopy are highlighted: * Interfaces to calculators: VASP, VASP DFPT, ABINIT, Quantu ESPRESSO, SIESTA, Elk, FHI-aims, WIEN2k, CRYSTAL * Python APIs - -WWW: https://phonopy.github.io/phonopy/ diff --git a/science/plumed/pkg-descr b/science/plumed/pkg-descr index ad2071969ad8..a4e5b42106c3 100644 --- a/science/plumed/pkg-descr +++ b/science/plumed/pkg-descr @@ -4,5 +4,3 @@ range of different methods, which include: * free-energy methods * tools to analyze the vast amounts of data produced by molecular dynamics (MD) simulations. - -WWW: https://www.plumed.org/ diff --git a/science/pnetcdf/pkg-descr b/science/pnetcdf/pkg-descr index 9b89f6d5248d..856981207a23 100644 --- a/science/pnetcdf/pkg-descr +++ b/science/pnetcdf/pkg-descr @@ -5,5 +5,4 @@ However, it does so in a serial manner, making it difficult to achieve high I/O performance. By making some small changes to the API specified by NetCDF, we can use MPI-IO and its collective operations. -WWW: https://parallel-netcdf.github.io/ -WWW: https://github.com/Parallel-NetCDF/PnetCDF +See also: https://github.com/Parallel-NetCDF/PnetCDF diff --git a/science/precice/pkg-descr b/science/precice/pkg-descr index 060a3a18b617..45bda6fcfd5f 100644 --- a/science/precice/pkg-descr +++ b/science/precice/pkg-descr @@ -1,5 +1,3 @@ preCICE is an open-source coupling library for partitioned multi-physics simulations, including, but not restricted to fluid-structure interaction and conjugate heat transfer simulations. - -WWW: https://precice.org/ diff --git a/science/pulseview/pkg-descr b/science/pulseview/pkg-descr index 4058f8588f43..2befe6d85b5b 100644 --- a/science/pulseview/pkg-descr +++ b/science/pulseview/pkg-descr @@ -4,5 +4,3 @@ various device types, such as logic analyzers, MSOs, oscilloscopes, multimeters, LCR meters, sound level meters, thermometers, hygrometers, anemometers, light meters, DAQs, dataloggers, function generators, spectrum analyzers, power supplies, GPIB interfaces, and more. - -WWW: https://sigrok.org/ diff --git a/science/py-DendroPy/pkg-descr b/science/py-DendroPy/pkg-descr index 3dcec3f3157c..7a507db67459 100644 --- a/science/py-DendroPy/pkg-descr +++ b/science/py-DendroPy/pkg-descr @@ -1,4 +1,2 @@ py-DendroPy is a python library for phylogenetic scripting, simulation, data processing and manipulation. - -WWW: http://packages.python.org/DendroPy/ diff --git a/science/py-GPy/pkg-descr b/science/py-GPy/pkg-descr index 5febbe57a551..2f63bf3fde0d 100644 --- a/science/py-GPy/pkg-descr +++ b/science/py-GPy/pkg-descr @@ -4,5 +4,3 @@ machine learning group. Gaussian processes underpin range of modern machine learning algorithms. In GPy, we've used python to implement a range of machine learning algorithms based on GPs. - -WWW: https://sheffieldml.github.io/GPy/ diff --git a/science/py-GPyOpt/pkg-descr b/science/py-GPyOpt/pkg-descr index 40c2ee595a4a..da87e86b50be 100644 --- a/science/py-GPyOpt/pkg-descr +++ b/science/py-GPyOpt/pkg-descr @@ -9,5 +9,3 @@ With GPyOpt you can: Among other functionalities, with GPyOpt you can design experiments in parallel, use cost models and mix different types of variables in your designs. Many users already use GpyOpt for research purposes. - -WWW: https://sheffieldml.github.io/GPyOpt/ diff --git a/science/py-MDAnalysis/pkg-descr b/science/py-MDAnalysis/pkg-descr index 10858d344efc..85ff46b45d6a 100644 --- a/science/py-MDAnalysis/pkg-descr +++ b/science/py-MDAnalysis/pkg-descr @@ -2,5 +2,3 @@ MDAnalysis is an object-oriented Python library to analyze trajectories from molecular dynamics (MD) simulations in many popular formats. It can write most of these formats, too, together with atom selections suitable for visualization or native analysis tools. - -WWW: https://www.mdanalysis.org diff --git a/science/py-MDAnalysisTests/pkg-descr b/science/py-MDAnalysisTests/pkg-descr index 3d95b4f7cfd4..ade8e8a2faf0 100644 --- a/science/py-MDAnalysisTests/pkg-descr +++ b/science/py-MDAnalysisTests/pkg-descr @@ -1,3 +1 @@ Test code and data for science/py-MDAnalysis. - -WWW: https://www.mdanalysis.org diff --git a/science/py-OpenFermion-Dirac/pkg-descr b/science/py-OpenFermion-Dirac/pkg-descr index bdaf521dcda0..0ef1060997a9 100644 --- a/science/py-OpenFermion-Dirac/pkg-descr +++ b/science/py-OpenFermion-Dirac/pkg-descr @@ -1,4 +1,2 @@ OpenFermion-Dirac is an interface between Openfermion and Dirac to perform relativistic quantum chemistry calculations simulated on a quantum computer. - -WWW: https://github.com/bsenjean/Openfermion-Dirac diff --git a/science/py-OpenFermion-PySCF/pkg-descr b/science/py-OpenFermion-PySCF/pkg-descr index 29d2abf7f5c2..95fdd0b27c7c 100644 --- a/science/py-OpenFermion-PySCF/pkg-descr +++ b/science/py-OpenFermion-PySCF/pkg-descr @@ -1,4 +1,2 @@ OpenFermion-PySCF is an interface between OpenFermion and PySCF to perform relativistic quantum chemistry calculations simulated on a quantum computer. - -WWW: https://github.com/quantumlib/OpenFermion-PySCF diff --git a/science/py-OpenFermion/pkg-descr b/science/py-OpenFermion/pkg-descr index bdbfc576e258..d1dd9fc2c725 100644 --- a/science/py-OpenFermion/pkg-descr +++ b/science/py-OpenFermion/pkg-descr @@ -3,5 +3,3 @@ algorithms to simulate fermionic systems, including quantum chemistry. Among other functionalities, the current version features data structures and tools for obtaining and manipulating representations of fermionic and qubit Hamiltonians. - -WWW: https://github.com/quantumlib/OpenFermion diff --git a/science/py-OpenMC/pkg-descr b/science/py-OpenMC/pkg-descr index 0b8570e22ec6..22d8e53ce6df 100644 --- a/science/py-OpenMC/pkg-descr +++ b/science/py-OpenMC/pkg-descr @@ -8,5 +8,3 @@ continuous-energy and multigroup transport. The continuous-energy particle interaction data is based on a native HDF5 format that can be generated from ACE files produced by NJOY. Parallelism is enabled via a hybrid MPI and OpenMP programming model. - -WWW: https://openmc.org/ diff --git a/science/py-PubChemPy/pkg-descr b/science/py-PubChemPy/pkg-descr index 75d7c85cf972..4ec687e51d35 100644 --- a/science/py-PubChemPy/pkg-descr +++ b/science/py-PubChemPy/pkg-descr @@ -2,5 +2,3 @@ PubChemPy provides a way to interact with PubChem in Python. It allows chemical searches by name, substructure and similarity, chemical standardization, conversion between chemical file formats, depiction and retrieval of chemical properties. - -WWW: https://github.com/mcs07/PubChemPy diff --git a/science/py-PyFR/pkg-descr b/science/py-PyFR/pkg-descr index 29886c9d0e7b..97fdab62b60b 100644 --- a/science/py-PyFR/pkg-descr +++ b/science/py-PyFR/pkg-descr @@ -16,5 +16,3 @@ following capabilities: * Precision - Single, Double * Mesh Files Imported - Gmsh (.msh), CGNS (.cgns) * Solution Files Exported - Unstructured VTK (.vtu, .pvtu) - -WWW: https://www.pyfr.org/ diff --git a/science/py-PyNE/pkg-descr b/science/py-PyNE/pkg-descr index 0a0ecb6320fa..d54703acb9f0 100644 --- a/science/py-PyNE/pkg-descr +++ b/science/py-PyNE/pkg-descr @@ -2,5 +2,3 @@ PyNE is a suite of tools to aid in computational nuclear science & engineering. PyNE seeks to provide native implementations of common nuclear algorithms, as well as Python bindings and I/O support for other industry standard nuclear codes. - -WWW: https://pyne.io/ diff --git a/science/py-SimpleSpectral/pkg-descr b/science/py-SimpleSpectral/pkg-descr index f452bb7338ed..17dbe8775db0 100644 --- a/science/py-SimpleSpectral/pkg-descr +++ b/science/py-SimpleSpectral/pkg-descr @@ -9,5 +9,3 @@ there are some important differences: * if you want to have best FFT performance with pyFFTW, you should create arrays with empty, zeros or ones functions from SimpleSpectral instead of generic versions from NumPy (arrays will be byte aligned for your CPU) - -WWW: https://github.com/xmikos/simplespectral diff --git a/science/py-abipy/pkg-descr b/science/py-abipy/pkg-descr index 50d805a4a6a5..a86ea9a962fe 100644 --- a/science/py-abipy/pkg-descr +++ b/science/py-abipy/pkg-descr @@ -5,5 +5,3 @@ AbiPy also provides tools to generate input files and workflows to automate ab-initio calculations and typical convergence studies. AbiPy is interfaced with Pymatgen allowing users to benefit from the different tools and python objects available in the pymatgen ecosystem. - -WWW: https://abinit.github.io/abipy/ diff --git a/science/py-access/pkg-descr b/science/py-access/pkg-descr index 92a2438eae53..f43a3a9a6fa2 100644 --- a/science/py-access/pkg-descr +++ b/science/py-access/pkg-descr @@ -5,5 +5,4 @@ spatial accessibility measures help identify potential spatial mismatches between the supply and demand of services. They indicate how close demand locations are to supply locations. -WWW: https://access.readthedocs.io/en/latest/ -WWW: https://github.com/pysal/access +See also: https://github.com/pysal/access diff --git a/science/py-asap3/pkg-descr b/science/py-asap3/pkg-descr index 35c4e41c140e..6444cbe82f15 100644 --- a/science/py-asap3/pkg-descr +++ b/science/py-asap3/pkg-descr @@ -1,4 +1,2 @@ ASAP is a calculator for doing large-scale classical molecular dynamics within the Campos Atomic Simulation Environment (ASE). - -WWW: https://wiki.fysik.dtu.dk/asap diff --git a/science/py-asdf-standard/pkg-descr b/science/py-asdf-standard/pkg-descr index 28f5c56922a6..35c17abaf5ac 100644 --- a/science/py-asdf-standard/pkg-descr +++ b/science/py-asdf-standard/pkg-descr @@ -2,5 +2,3 @@ ASDF standard This document describes the Advanced Scientific Data Format (ASDF), pronounced AZ-diff. - -WWW: https://github.com/asdf-format/asdf-standard diff --git a/science/py-asdf-transform-schemas/pkg-descr b/science/py-asdf-transform-schemas/pkg-descr index 8c2b03d8f6bb..00c467ec20f1 100644 --- a/science/py-asdf-transform-schemas/pkg-descr +++ b/science/py-asdf-transform-schemas/pkg-descr @@ -1,5 +1,3 @@ This package provides ASDF schemas for validating transform tags. Users should not need to install this directly; instead, install an implementation package such as asdf-astropy, which includes asdf-transform-schemas as a dependency. - -WWW: https://github.com/asdf-format/asdf-transform-schemas diff --git a/science/py-asdf/pkg-descr b/science/py-asdf/pkg-descr index 4e08c9a3e749..b021f564a874 100644 --- a/science/py-asdf/pkg-descr +++ b/science/py-asdf/pkg-descr @@ -11,5 +11,3 @@ The ASDF format has the following features: - Native Python data types (numerical types, strings, dicts, lists) are serialized automatically - ASDF can be extended to serialize custom data types - -WWW: https://github.com/asdf-format/asdf diff --git a/science/py-ase/pkg-descr b/science/py-ase/pkg-descr index 2db29e8a6ba0..84811998fdb3 100644 --- a/science/py-ase/pkg-descr +++ b/science/py-ase/pkg-descr @@ -1,4 +1,2 @@ ASE is a set of tools and Python modules for setting up, manipulating, running, visualizing and analyzing atomistic simulations. - -WWW: https://wiki.fysik.dtu.dk/ase/ diff --git a/science/py-avogadrolibs/pkg-descr b/science/py-avogadrolibs/pkg-descr index 9be0c13c6577..4ea19b63977b 100644 --- a/science/py-avogadrolibs/pkg-descr +++ b/science/py-avogadrolibs/pkg-descr @@ -4,5 +4,3 @@ Avogadro 2 project. Avogadro 2 is a chemical editor and visualization application, it is also a set of reusable software libraries written in C++ using principles of modularity for maximum reuse. - -WWW: https://www.openchemistry.org/projects/avogadro2/ diff --git a/science/py-cdo/pkg-descr b/science/py-cdo/pkg-descr index 14ee8aac262c..cd87d9f4fa7c 100644 --- a/science/py-cdo/pkg-descr +++ b/science/py-cdo/pkg-descr @@ -1,4 +1,3 @@ Python binding to CDO (Climate Data Operators) -WWW: https://code.mpimet.mpg.de/projects/cdo/wiki/Cdo%7Brbpy%7D -WWW: https://github.com/Try2Code/cdo-bindings +See also: https://github.com/Try2Code/cdo-bindings diff --git a/science/py-chainer-chemistry/pkg-descr b/science/py-chainer-chemistry/pkg-descr index c951f9ff5c8b..4eeb7373e890 100644 --- a/science/py-chainer-chemistry/pkg-descr +++ b/science/py-chainer-chemistry/pkg-descr @@ -2,5 +2,3 @@ Chainer Chemistry is a deep learning framework (based on Chainer) with applications in Biology and Chemistry. It supports various state-of-the-art models (especially GCNN - Graph Convolutional Neural Network) for chemical property prediction. - -WWW: https://github.com/pfnet-research/chainer-chemistry diff --git a/science/py-chainer/pkg-descr b/science/py-chainer/pkg-descr index 3ce9ee5662f2..01f371214417 100644 --- a/science/py-chainer/pkg-descr +++ b/science/py-chainer/pkg-descr @@ -7,5 +7,3 @@ Chainer is a powerful, flexible and intuitive deep learning framework. * Forward computation can include any control flow statements of Python without lacking the ability of backpropagation. It makes code intuitive and easy to debug. - -WWW: https://chainer.org/ diff --git a/science/py-chempy/pkg-descr b/science/py-chempy/pkg-descr index 6d625b304a0e..1d190cfe0910 100644 --- a/science/py-chempy/pkg-descr +++ b/science/py-chempy/pkg-descr @@ -13,5 +13,3 @@ physical/inorganic/analytical chemistry). Currently it includes: * water diffusivity as function of temperature * water viscosity as function of temperature * sulfuric acid density as function of temperature & weight fraction H2SO4 - -WWW: https://github.com/bjodah/chempy diff --git a/science/py-cirq-aqt/pkg-descr b/science/py-cirq-aqt/pkg-descr index 7526d4dc215d..d8e759cab6cf 100644 --- a/science/py-cirq-aqt/pkg-descr +++ b/science/py-cirq-aqt/pkg-descr @@ -1,4 +1,2 @@ cirq-ionq provides everything you'll need to run Cirq quantum algorithms on AQT quantum computers. - -WWW: https://github.com/quantumlib/cirq diff --git a/science/py-cirq-core/pkg-descr b/science/py-cirq-core/pkg-descr index 69d0f6d7563b..30903f3521db 100644 --- a/science/py-cirq-core/pkg-descr +++ b/science/py-cirq-core/pkg-descr @@ -1,4 +1,2 @@ Cirq is a Python library for writing, manipulating, and optimizing quantum circuits and running them against quantum computers and simulators. - -WWW: https://github.com/quantumlib/cirq diff --git a/science/py-cirq-google/pkg-descr b/science/py-cirq-google/pkg-descr index 4da714b04b3c..1eff5f6fbbd5 100644 --- a/science/py-cirq-google/pkg-descr +++ b/science/py-cirq-google/pkg-descr @@ -1,5 +1,3 @@ Google Cirq adapter for IQM's quantum architectures. Part of the Cirq quantum computing framework. - -WWW: https://github.com/quantumlib/Cirq diff --git a/science/py-cirq-ionq/pkg-descr b/science/py-cirq-ionq/pkg-descr index 17194c8eae66..84d528289798 100644 --- a/science/py-cirq-ionq/pkg-descr +++ b/science/py-cirq-ionq/pkg-descr @@ -1,4 +1,2 @@ cirq-ionq provides everything you'll need to run Cirq quantum algorithms on IonQ quantum computers. - -WWW: https://github.com/quantumlib/cirq diff --git a/science/py-cirq-pasqal/pkg-descr b/science/py-cirq-pasqal/pkg-descr index d9b16745890d..e2b627a08b6e 100644 --- a/science/py-cirq-pasqal/pkg-descr +++ b/science/py-cirq-pasqal/pkg-descr @@ -1,4 +1,2 @@ cirq-ionq provides everything you'll need to run Cirq quantum algorithms on pasqal quantum computers. - -WWW: https://github.com/quantumlib/cirq diff --git a/science/py-cirq-rigetti/pkg-descr b/science/py-cirq-rigetti/pkg-descr index 06a4cf0b9b6b..f42a2725c284 100644 --- a/science/py-cirq-rigetti/pkg-descr +++ b/science/py-cirq-rigetti/pkg-descr @@ -1,4 +1,2 @@ cirq-ionq provides everything you'll need to run Cirq quantum algorithms on Rigetti quantum computers. - -WWW: https://github.com/quantumlib/cirq diff --git a/science/py-coards/pkg-descr b/science/py-coards/pkg-descr index 0df7bf64dce4..db5b30f26f01 100644 --- a/science/py-coards/pkg-descr +++ b/science/py-coards/pkg-descr @@ -1,3 +1 @@ Coards is a parser for time values represented using the COARDS convention. - -WWW: https://pypi.org/project/coards/ diff --git a/science/py-dimod/pkg-descr b/science/py-dimod/pkg-descr index dcaf688769da..028b96ef6650 100644 --- a/science/py-dimod/pkg-descr +++ b/science/py-dimod/pkg-descr @@ -7,5 +7,3 @@ dimod is a shared API for samplers. It provides: - and higher-order (non-quadratic) models * reference examples of samplers and composed samplers * abstract base classes for constructing new samplers and composed samplers - -WWW: https://github.com/dwavesystems/dimod diff --git a/science/py-dipy/pkg-descr b/science/py-dipy/pkg-descr index 791e3b727567..511b9b053444 100644 --- a/science/py-dipy/pkg-descr +++ b/science/py-dipy/pkg-descr @@ -3,5 +3,3 @@ for spatial normalization, signal processing, machine learning, statistical analysis and visualization of medical images. Additionally, it contains specialized methods for computational anatomy including diffusion, perfusion and structural imaging. - -WWW: https://dipy.org/ diff --git a/science/py-dlib/pkg-descr b/science/py-dlib/pkg-descr index e21d365dbaac..5a6cf126961b 100644 --- a/science/py-dlib/pkg-descr +++ b/science/py-dlib/pkg-descr @@ -3,5 +3,3 @@ and tools for creating complex software in C++ to solve real world problems. It is used in both industry and academia in a wide range of domains including robotics, embedded devices, mobile phones, and large high performance computing environments. - -WWW: http://dlib.net diff --git a/science/py-dwave-cloud-client/pkg-descr b/science/py-dwave-cloud-client/pkg-descr index 53bf6d78d25c..51828ca243d8 100644 --- a/science/py-dwave-cloud-client/pkg-descr +++ b/science/py-dwave-cloud-client/pkg-descr @@ -5,5 +5,3 @@ SAPI is an application layer built to provide resource discovery, permissions, and scheduling for quantum annealing resources at D-Wave Systems. This package provides a minimal Python interface to that layer without compromising the quality of interactions and workflow. - -WWW: https://github.com/dwavesystems/dwave-cloud-client diff --git a/science/py-dwave-greedy/pkg-descr b/science/py-dwave-greedy/pkg-descr index 64bdfff93506..76810a146c85 100644 --- a/science/py-dwave-greedy/pkg-descr +++ b/science/py-dwave-greedy/pkg-descr @@ -5,5 +5,3 @@ Steepest descent is the discrete analogue of gradient descent, but the best move is computed using a local minimization rather rather than computing a gradient. At each step, we determine the dimension along which to descend based on the highest energy drop caused by a variable flip. - -WWW: https://docs.ocean.dwavesys.com/projects/greedy/en/latest/ diff --git a/science/py-dwave-hybrid/pkg-descr b/science/py-dwave-hybrid/pkg-descr index cf43844e8a74..a4cefacffab6 100644 --- a/science/py-dwave-hybrid/pkg-descr +++ b/science/py-dwave-hybrid/pkg-descr @@ -8,5 +8,3 @@ dwave-hybrid facilitates three aspects of solution development: strategies * Experimenting with workflow structures and parameters to obtain the best application results - -WWW: https://docs.ocean.dwavesys.com/projects/hybrid/en/stable/ diff --git a/science/py-dwave-inspector/pkg-descr b/science/py-dwave-inspector/pkg-descr index f63683fd73e5..d3ff9e1e340b 100644 --- a/science/py-dwave-inspector/pkg-descr +++ b/science/py-dwave-inspector/pkg-descr @@ -1,5 +1,3 @@ dwave-inspector is a tool for visualizing problems submitted to, and answers received from, a D-Wave structured solver such as an Advantage(TM) quantum computer. - -WWW: https://docs.ocean.dwavesys.com/projects/inspector/en/latest/ diff --git a/science/py-dwave-neal/pkg-descr b/science/py-dwave-neal/pkg-descr index 4232cdcfec2a..0f928db68f50 100644 --- a/science/py-dwave-neal/pkg-descr +++ b/science/py-dwave-neal/pkg-descr @@ -8,5 +8,3 @@ fixed order per point in the beta_schedule according to a Metropolis- Hastings update. When beta is large the target distribution concentrates, at equilibrium, over ground states of the model. Samples are guaranteed to match the equilibrium for long 'smooth' beta schedules. - -WWW: https://github.com/dwavesystems/dwave-neal diff --git a/science/py-dwave-networkx/pkg-descr b/science/py-dwave-networkx/pkg-descr index e00150f775c2..4620fc50bb27 100644 --- a/science/py-dwave-networkx/pkg-descr +++ b/science/py-dwave-networkx/pkg-descr @@ -3,5 +3,3 @@ exploration and analysis of networks and network algorithms - for users of D-Wave Systems. It provides tools for working with Chimera graphs and implementations of graph-theory algorithms on the D-Wave system and other binary quadratic model samplers. - -WWW: https://github.com/dwavesystems/dwave-networkx diff --git a/science/py-dwave-ocean-sdk/pkg-descr b/science/py-dwave-ocean-sdk/pkg-descr index 4bd3d49b8c86..6005d58ee2ec 100644 --- a/science/py-dwave-ocean-sdk/pkg-descr +++ b/science/py-dwave-ocean-sdk/pkg-descr @@ -1,4 +1,2 @@ dwave-ocean-sdk is a meta-package that installs Ocean, a D-Wave's suite of tools for solving hard problems with quantum computers. - -WWW: https://docs.ocean.dwavesys.com/en/stable/ diff --git a/science/py-dwave-preprocessing/pkg-descr b/science/py-dwave-preprocessing/pkg-descr index 602f35493d33..56e0d5abba19 100644 --- a/science/py-dwave-preprocessing/pkg-descr +++ b/science/py-dwave-preprocessing/pkg-descr @@ -1,4 +1,2 @@ dwave-preprocessing is a package of common preprocessing tools that can aid in solving binary quadratic models (BQM). - -WWW: https://github.com/dwavesystems/dwave-preprocessing diff --git a/science/py-dwave-samplers/pkg-descr b/science/py-dwave-samplers/pkg-descr index e580bf99ce0d..24b45e0cddc7 100644 --- a/science/py-dwave-samplers/pkg-descr +++ b/science/py-dwave-samplers/pkg-descr @@ -13,5 +13,3 @@ quadratic models (BQM): * Tabu: a heuristic that employs local search with methods to escape local minima. * Tree Decomposition: an exact solver for problems with low treewidth. - -WWW: https://github.com/dwavesystems/dwave-samplers diff --git a/science/py-dwave-system/pkg-descr b/science/py-dwave-system/pkg-descr index 0ccbbf9dfe23..2f884fc1e7ed 100644 --- a/science/py-dwave-system/pkg-descr +++ b/science/py-dwave-system/pkg-descr @@ -6,5 +6,3 @@ authentication down the stack, LeapHybridSampler, for Leap's hybrid solvers, and other. It also includes several useful composites - layers of pre- and post-processing - that can be used with DWaveSampler to handle minor-embedding, optimize chain strength, etc. - -WWW: https://github.com/dwavesystems/dwave-system diff --git a/science/py-dwave-tabu/pkg-descr b/science/py-dwave-tabu/pkg-descr index 7a45ca77feea..806a39ffcb8b 100644 --- a/science/py-dwave-tabu/pkg-descr +++ b/science/py-dwave-tabu/pkg-descr @@ -1,5 +1,3 @@ dwave-tabu is a C/C++ implementation of the MST2 multistart tabu search algorithm for quadratic unconstrained binary optimization (QUBO) problems with a dimod sampler Python interface. - -WWW: https://github.com/dwavesystems/dwave-tabu diff --git a/science/py-dwavebinarycsp/pkg-descr b/science/py-dwavebinarycsp/pkg-descr index ffc8572d8620..789879cf256c 100644 --- a/science/py-dwavebinarycsp/pkg-descr +++ b/science/py-dwavebinarycsp/pkg-descr @@ -1,4 +1,2 @@ dwavebinarycsp is a library to construct a binary quadratic model from a constraint satisfaction problem with small constraints over binary variables. - -WWW: https://docs.ocean.dwavesys.com/projects/binarycsp/en/latest/ diff --git a/science/py-eccodes/pkg-descr b/science/py-eccodes/pkg-descr index 533369539ff1..a8c6f7dbf07e 100644 --- a/science/py-eccodes/pkg-descr +++ b/science/py-eccodes/pkg-descr @@ -11,5 +11,3 @@ Features: mode), - supports writing the index of a GRIB file to disk, to save a full-file scan on open. - -WWW: https://github.com/ecmwf/eccodes-python diff --git a/science/py-esda/pkg-descr b/science/py-esda/pkg-descr index 877c1664e8fa..8e3063186698 100644 --- a/science/py-esda/pkg-descr +++ b/science/py-esda/pkg-descr @@ -5,5 +5,4 @@ data. A subpackage of PySAL (Python Spatial Analysis Library), it is under active development and includes methods for global and local spatial autocorrelation analysis. -WWW: https://pysal.org/esda/ -WWW: https://github.com/pysal/esda +See also: https://github.com/pysal/esda diff --git a/science/py-fresnel/pkg-descr b/science/py-fresnel/pkg-descr index 0b93f238e831..dbb196a46c2e 100644 --- a/science/py-fresnel/pkg-descr +++ b/science/py-fresnel/pkg-descr @@ -5,5 +5,3 @@ engine. fresnel also supports multi-core CPUs using Intel's Embree ray tracing kernels. Path tracing enables high quality global illumination and advanced rendering effects controlled by intuitive parameters (like roughness, specular, and metal). - -WWW: https://github.com/glotzerlab/fresnel diff --git a/science/py-geolinks/pkg-descr b/science/py-geolinks/pkg-descr index 535b5228d65d..edd967aee948 100644 --- a/science/py-geolinks/pkg-descr +++ b/science/py-geolinks/pkg-descr @@ -1,3 +1 @@ geolinks provides utilities to deal with geospatial links. - -WWW: https://github.com/geopython/geolinks diff --git a/science/py-geomet/pkg-descr b/science/py-geomet/pkg-descr index e467502084a3..81082a58aa56 100644 --- a/science/py-geomet/pkg-descr +++ b/science/py-geomet/pkg-descr @@ -4,5 +4,3 @@ idiomatic load/loads/dump/dumps interfaces. GeoMet is intended to cover all common use cases for dealing with 2D, 3D, and 4D geometries (including 'Z', 'M', and 'ZM'). - -WWW: https://github.com/geomet/geomet diff --git a/science/py-geometer/pkg-descr b/science/py-geometer/pkg-descr index dd1947b0d39f..d51cb00f00b3 100644 --- a/science/py-geometer/pkg-descr +++ b/science/py-geometer/pkg-descr @@ -14,5 +14,3 @@ There are points at infinity that can be treated just like normal points. angles and to construct perpendicular geometric structures. - Most of the computation in the library done via tensor diagrams (using numpy.einsum). - -WWW: https://github.com/jan-mue/geometer diff --git a/science/py-geometric/pkg-descr b/science/py-geometric/pkg-descr index 028fdd6ac8af..67b1b70ac313 100644 --- a/science/py-geometric/pkg-descr +++ b/science/py-geometric/pkg-descr @@ -5,5 +5,3 @@ quantum chemistry codes through the command line interface. The PySCF and QCArchive packages also provide interfaces to geomeTRIC for optimization. MM optimizations using OpenMM and Gromacs are also supported through the command line interface. - -WWW: https://github.com/leeping/geomeTRIC diff --git a/science/py-gpaw/pkg-descr b/science/py-gpaw/pkg-descr index 21ddb9140a0d..0938110ccf9e 100644 --- a/science/py-gpaw/pkg-descr +++ b/science/py-gpaw/pkg-descr @@ -2,5 +2,3 @@ GPAW is a density-functional theory (DFT) Python code based on the projector-augmented wave (PAW) method and the atomic simulation environment (ASE). It uses plane-waves, atom-centered basis-functions or real-space uniform grids combined with multigrid methods. - -WWW: https://wiki.fysik.dtu.dk/gpaw/ diff --git a/science/py-gsd/pkg-descr b/science/py-gsd/pkg-descr index 1dad7c0e35d3..1408e9417d84 100644 --- a/science/py-gsd/pkg-descr +++ b/science/py-gsd/pkg-descr @@ -18,5 +18,3 @@ Features: * Generic use case: binary blob of N bytes. * Easy to integrate into other tools with python, or a C API (< 1k lines). * Fast random access to frames. - -WWW: https://bitbucket.org/glotzer/gsd/wiki/Home diff --git a/science/py-h5json/pkg-descr b/science/py-h5json/pkg-descr index bb273780695d..5213a14e855c 100644 --- a/science/py-h5json/pkg-descr +++ b/science/py-h5json/pkg-descr @@ -6,5 +6,3 @@ The library is useful for any Python application that needs to translate between HDF5 objects and JSON serializations. In addition to the utilities provided in this repository, the library is used by HDF Server (a RESTful web service for HDF5), and HDF Product Designer (an application for creating product designs). - -WWW: https://github.com/HDFGroup/hdf5-json diff --git a/science/py-h5py/pkg-descr b/science/py-h5py/pkg-descr index d8b9f5e206f6..3adadd6581a1 100644 --- a/science/py-h5py/pkg-descr +++ b/science/py-h5py/pkg-descr @@ -7,5 +7,4 @@ A strong emphasis on automatic conversion between Python (Numpy) datatypes and data structures and their HDF5 equivalents vastly simplifies the process of reading and writing data from Python. -WWW: https://www.h5py.org/ -WWW: https://github.com/h5py/h5py +See also: https://github.com/h5py/h5py diff --git a/science/py-hiphive/pkg-descr b/science/py-hiphive/pkg-descr index dae73c719f8b..34337fd0cef4 100644 --- a/science/py-hiphive/pkg-descr +++ b/science/py-hiphive/pkg-descr @@ -3,5 +3,3 @@ atomistic simulations, most commonly density functional theory calculations. It has been implemented in the form of a Python library, which allows it to be readily integrated with many first-principles codes and analysis tools accessible in Python. - -WWW: https://hiphive.materialsmodeling.org/ diff --git a/science/py-hoomd-blue/pkg-descr b/science/py-hoomd-blue/pkg-descr index 7191197adb1c..1d03df4fe5fb 100644 --- a/science/py-hoomd-blue/pkg-descr +++ b/science/py-hoomd-blue/pkg-descr @@ -4,5 +4,3 @@ optimized for fast execution on both GPUs and CPUs. As a Python package, HOOMD-blue gives you the flexibility to create custom initialization routines, control simulation parameters, perform in situ analysis, use interactive notebooks, and more. - -WWW: https://glotzerlab.engin.umich.edu/hoomd-blue/ diff --git a/science/py-inequality/pkg-descr b/science/py-inequality/pkg-descr index a28caaf26d5b..0583dbf4e18c 100644 --- a/science/py-inequality/pkg-descr +++ b/science/py-inequality/pkg-descr @@ -1,5 +1,4 @@ inequality implements measures for the analysis of inequality over space and time and is part of the PySAL family. -WWW: https://inequality.readthedocs.io/en/latest/ -WWW: https://github.com/pysal/inequality +See also: https://github.com/pysal/inequality diff --git a/science/py-jupyter_jsmol/pkg-descr b/science/py-jupyter_jsmol/pkg-descr index 73a7de477917..e7db0a4729b8 100644 --- a/science/py-jupyter_jsmol/pkg-descr +++ b/science/py-jupyter_jsmol/pkg-descr @@ -1,3 +1 @@ JSmol viewer widget which can be used in Jupyter Notebooks and JupyterLab. - -WWW: https://github.com/fekad/jupyter-jsmol diff --git a/science/py-kim-query/pkg-descr b/science/py-kim-query/pkg-descr index fb391ab60a54..badc43351b81 100644 --- a/science/py-kim-query/pkg-descr +++ b/science/py-kim-query/pkg-descr @@ -1,4 +1,2 @@ Helper routines for querying the OpenKIM database hosted at https://query.openkim.org - -WWW: https://github.com/openkim/kim-query diff --git a/science/py-kinematics/pkg-descr b/science/py-kinematics/pkg-descr index 0da8dee98e09..c0fd8ab50169 100644 --- a/science/py-kinematics/pkg-descr +++ b/science/py-kinematics/pkg-descr @@ -1,4 +1,2 @@ kinematics is Python package to perform attitude kinematics. It is written completely in Python and only requires numpy as a runtime dependency. - -WWW: https://github.com/skulumani/kinematics diff --git a/science/py-kliff/pkg-descr b/science/py-kliff/pkg-descr index 1c68e08db4c1..5345cd7120ce 100644 --- a/science/py-kliff/pkg-descr +++ b/science/py-kliff/pkg-descr @@ -1,5 +1,3 @@ KLIFF is an interatomic potential fitting package that can be used to fit physics-motivated (PM) potentials, as well as machine learning potentials such as the neural network (NN) models. - -WWW: https://github.com/mjwen/kliff diff --git a/science/py-kpLib/pkg-descr b/science/py-kpLib/pkg-descr index 85bac397b280..7e8beca11825 100644 --- a/science/py-kpLib/pkg-descr +++ b/science/py-kpLib/pkg-descr @@ -3,5 +3,3 @@ Monkhorst-Pack k-points grid. It can be imported into electronic-structure packages as a generator of efficient generalized k-point grids, or be integrated into user scripts through the python interface. - -WWW: https://gitlab.com/muellergroup/kplib diff --git a/science/py-liac-arff/pkg-descr b/science/py-liac-arff/pkg-descr index 111357954ef6..614dd1b824b3 100644 --- a/science/py-liac-arff/pkg-descr +++ b/science/py-liac-arff/pkg-descr @@ -7,5 +7,3 @@ ARFF (Attribute-Relation File Format) is an file format specially created for describe datasets which are used commonly for machine learning experiments and softwares. This file format was created to be used in Weka, the best representative software for machine learning automated experiments. - -WWW: https://github.com/renatopp/liac-arff diff --git a/science/py-libgetar/pkg-descr b/science/py-libgetar/pkg-descr index 8739c7f63419..78c03ed49ab2 100644 --- a/science/py-libgetar/pkg-descr +++ b/science/py-libgetar/pkg-descr @@ -1,5 +1,3 @@ libgetar is a library to read and write GEneric Trajectory ARchives, a binary data format designed for efficient, extensible storage of trajectory data. - -WWW: https://github.com/glotzerlab/libgetar diff --git a/science/py-libpysal/pkg-descr b/science/py-libpysal/pkg-descr index dff943e92236..29c40683845c 100644 --- a/science/py-libpysal/pkg-descr +++ b/science/py-libpysal/pkg-descr @@ -7,5 +7,4 @@ packages in the PySAL family: - Computational geometry: libpysal.cg - Built-in example datasets libpysal.examples -WWW: https://pysal.org/libpysal/ -WWW: https://github.com/pysal/libpysal +See also: https://github.com/pysal/libpysal diff --git a/science/py-lifelines/pkg-descr b/science/py-lifelines/pkg-descr index eeacadedf776..21df4b71a9e7 100644 --- a/science/py-lifelines/pkg-descr +++ b/science/py-lifelines/pkg-descr @@ -1,3 +1 @@ Survival analysis in Python, including Kaplan Meier, Nelson Aalen and regression - -WWW: https://github.com/CamDavidsonPilon/lifelines/ diff --git a/science/py-mdp/pkg-descr b/science/py-mdp/pkg-descr index fc4b2bd6c4c7..2e8417987392 100644 --- a/science/py-mdp/pkg-descr +++ b/science/py-mdp/pkg-descr @@ -4,5 +4,3 @@ Analysis (PCA), Independent Component Analysis (ICA), Slow Feature Analysis (SFA), Independent Slow Feature Analysis (ISFA), Growing Neural Gas (GNG), Factor Analysis, Fisher Discriminant Analysis (FDA), Gaussian Classifiers, and Restricted Boltzmann Machines. - -WWW: http://mdp-toolkit.sourceforge.net/ diff --git a/science/py-mmtf-python/pkg-descr b/science/py-mmtf-python/pkg-descr index 6620b88af031..1dcbe8563395 100644 --- a/science/py-mmtf-python/pkg-descr +++ b/science/py-mmtf-python/pkg-descr @@ -2,5 +2,3 @@ The python implementation of the MMTF API, decoder and encoder. The macromolecular transmission format (MMTF) is a binary encoding of biological structures. - -WWW: https://github.com/rcsb/mmtf-python diff --git a/science/py-molmod/pkg-descr b/science/py-molmod/pkg-descr index 391394ea753e..2f12b70f86c2 100644 --- a/science/py-molmod/pkg-descr +++ b/science/py-molmod/pkg-descr @@ -1,4 +1,2 @@ MolMod is a collection of molecular modelling tools for python. It is used by other software developed at the CMM, including Yaff, TAMkin and Zeobuilder. - -WWW: https://github.com/molmod/molmod diff --git a/science/py-moltemplate/pkg-descr b/science/py-moltemplate/pkg-descr index bed91debeff2..f56ed6c748cd 100644 --- a/science/py-moltemplate/pkg-descr +++ b/science/py-moltemplate/pkg-descr @@ -14,5 +14,3 @@ built, individual molecules and subunits can be customized (atoms, bonds, and subunits can be moved and deleted). Moltemplate is currently interoperable with: VMD , PACKMOL , OVITO , CellPACK , VIPSTER , and the ATB molecule server (by using the ltemplify.py converter). - -WWW: https://www.moltemplate.org/ diff --git a/science/py-netCDF4/pkg-descr b/science/py-netCDF4/pkg-descr index 5a31e3053dc2..262f083a28bd 100644 --- a/science/py-netCDF4/pkg-descr +++ b/science/py-netCDF4/pkg-descr @@ -10,5 +10,3 @@ unlimited dimensions, groups and zlib data compression. All the new primitive data types (such as 64 bit and unsigned integer types) are implemented, except variable-length strings (NC_STRING). User defined data types (compound, vlen, enum etc.) are not supported. - -WWW: http://unidata.github.io/netcdf4-python/ diff --git a/science/py-netcdf-flattener/pkg-descr b/science/py-netcdf-flattener/pkg-descr index b1612424030b..6f0503cc37c7 100644 --- a/science/py-netcdf-flattener/pkg-descr +++ b/science/py-netcdf-flattener/pkg-descr @@ -1,4 +1,2 @@ The flattener takes as input and output NetCDF Dataset objects, which the user can create or open from ".nc" files using the netCDF4 API. - -WWW: https://gitlab.eumetsat.int/open-source/netcdf-flattener diff --git a/science/py-nibabel/pkg-descr b/science/py-nibabel/pkg-descr index c7c24359009e..e0b6564b4bca 100644 --- a/science/py-nibabel/pkg-descr +++ b/science/py-nibabel/pkg-descr @@ -7,5 +7,3 @@ the successor of PyNIfTI. The various image format classes give full or selective access to header (meta) information and access to the image data is made available via NumPy arrays. - -WWW: https://nipy.org/nibabel/ diff --git a/science/py-nilearn/pkg-descr b/science/py-nilearn/pkg-descr index 66032248bb20..5e85ecdb88ba 100644 --- a/science/py-nilearn/pkg-descr +++ b/science/py-nilearn/pkg-descr @@ -8,5 +8,3 @@ as predictive modelling, classification, decoding, or connectivity analysis. Nilearn now includes the functionality of Nistats. Here's a guide to replacing Nistats imports to work in Nilearn. - -WWW: http://nilearn.github.io/ diff --git a/science/py-obspy/pkg-descr b/science/py-obspy/pkg-descr index 41b71ff8ebac..7a3adba1e1a0 100644 --- a/science/py-obspy/pkg-descr +++ b/science/py-obspy/pkg-descr @@ -6,5 +6,3 @@ et al. 2010, Megies et al. 2011). The goal of the ObsPy project is to facilitate rapid application development for seismology. - -WWW: http://www.obspy.org/ diff --git a/science/py-oddt/pkg-descr b/science/py-oddt/pkg-descr index 7ea47d1a64a6..0eb7c51debcf 100644 --- a/science/py-oddt/pkg-descr +++ b/science/py-oddt/pkg-descr @@ -1,5 +1,3 @@ Open Drug Discovery Toolkit (ODDT) is modular and comprehensive toolkit for use in cheminformatics, molecular modeling etc. ODDT is written in Python, and make extensive use of numpy/scipy. - -WWW: https://github.com/oddt/oddt diff --git a/science/py-openpiv/pkg-descr b/science/py-openpiv/pkg-descr index 08f42f90c1fc..127b1d86b8fd 100644 --- a/science/py-openpiv/pkg-descr +++ b/science/py-openpiv/pkg-descr @@ -1,4 +1,2 @@ OpenPIV is open-source software for Particle Image Velocimetry (PIV) image analysis and post-processing. - -WWW: http://www.openpiv.net/ diff --git a/science/py-paida/pkg-descr b/science/py-paida/pkg-descr index 485267396eb3..6e67ee963eef 100644 --- a/science/py-paida/pkg-descr +++ b/science/py-paida/pkg-descr @@ -5,5 +5,3 @@ AIDA (Abstract Interfaces for Data Analysis). The main features are: - Fitting parameter optimization with constraints and its parabolic and asymmetric error evaluation - XML based storing - -WWW: http://paida.sourceforge.net diff --git a/science/py-paramz/pkg-descr b/science/py-paramz/pkg-descr index 63be464b97d4..4757a7df4ba5 100644 --- a/science/py-paramz/pkg-descr +++ b/science/py-paramz/pkg-descr @@ -13,5 +13,3 @@ Features: * Jupyter notebook integration * Efficient storage of models, for reloading * Efficient caching included - -WWW: https://github.com/sods/paramz diff --git a/science/py-penaltymodel/pkg-descr b/science/py-penaltymodel/pkg-descr index 176197dd3829..cee41fda732a 100644 --- a/science/py-penaltymodel/pkg-descr +++ b/science/py-penaltymodel/pkg-descr @@ -3,5 +3,3 @@ penaltymodel is a set of utilities and interfaces for using penalty models. One approach to solve a constraint satisfaction problem (CSP) using an Ising model or a QUBO, is to map each individual constraint in the CSP to a 'small' Ising model or QUBO. This mapping is called a penalty model. - -WWW: https://docs.ocean.dwavesys.com/projects/penaltymodel/en/latest/ diff --git a/science/py-phono3py/pkg-descr b/science/py-phono3py/pkg-descr index 2e10c7654608..890a612d863e 100644 --- a/science/py-phono3py/pkg-descr +++ b/science/py-phono3py/pkg-descr @@ -5,5 +5,3 @@ obtained: * Phonon lifetime/linewidth * Imaginary part of self energy * Joint density of states (JDOS) and weighted-JDOS - -WWW: https://atztogo.github.io/phono3py/ diff --git a/science/py-phonopy/pkg-descr b/science/py-phonopy/pkg-descr index 75af12838676..e4e306574830 100644 --- a/science/py-phonopy/pkg-descr +++ b/science/py-phonopy/pkg-descr @@ -16,5 +16,3 @@ The following features of phonopy are highlighted: * Interfaces to calculators: VASP, VASP DFPT, ABINIT, Quantu ESPRESSO, SIESTA, Elk, FHI-aims, WIEN2k, CRYSTAL * Python APIs - -WWW: https://phonopy.github.io/phonopy/ diff --git a/science/py-pupynere/pkg-descr b/science/py-pupynere/pkg-descr index b560aa37ea11..e290d709a238 100644 --- a/science/py-pupynere/pkg-descr +++ b/science/py-pupynere/pkg-descr @@ -2,5 +2,4 @@ Pupynere is a Python module for reading and writing NetCDF files, using the same API as Scientific.IO.NetCDF and pynetcdf. It depends only on Numpy, so you don't need to have the NetCDF library installed. -WWW: https://pypi.org/project/pupynere/ -WWW: https://bitbucket.org/robertodealmeida/pupynere +See also: https://pypi.org/project/pupynere/ diff --git a/science/py-py3Dmol/pkg-descr b/science/py-py3Dmol/pkg-descr index 34325bbf0353..9e87ea3b6fd6 100644 --- a/science/py-py3Dmol/pkg-descr +++ b/science/py-py3Dmol/pkg-descr @@ -1,3 +1 @@ py3Dmol is an IPython interface for embedding 3Dmol.js views. - -WWW: https://3dmol.csb.pitt.edu/ diff --git a/science/py-pyaixi/pkg-descr b/science/py-pyaixi/pkg-descr index c8f2459b1665..5ba69cdf0c82 100644 --- a/science/py-pyaixi/pkg-descr +++ b/science/py-pyaixi/pkg-descr @@ -4,5 +4,3 @@ Weighting (MC-AIXI-CTW) artificial intelligence algorithm. This is an approximation of the AIXI universal artificial intelligence algorithm, which describes a model-based, reinforcement-learning agent capable of general learning. - -WWW: https://github.com/sgkasselau/pyaixi diff --git a/science/py-pyberny/pkg-descr b/science/py-pyberny/pkg-descr index 0de3201f0703..ee5ff47cf02c 100644 --- a/science/py-pyberny/pkg-descr +++ b/science/py-pyberny/pkg-descr @@ -8,5 +8,3 @@ The package implements a single optimization algorithm, which is an amalgam of several techniques, comprising the quasi-Newton method, redundant internal coordinates, an iterative Hessian approximation, a trust region scheme, and linear search. The algorithm is described in more detailed in the documentation. - -WWW: https://github.com/jhrmnn/pyberny diff --git a/science/py-pycsw/pkg-descr b/science/py-pycsw/pkg-descr index f028a2f0e764..0002ede6a096 100644 --- a/science/py-pycsw/pkg-descr +++ b/science/py-pycsw/pkg-descr @@ -5,5 +5,4 @@ SRU), providing a standards-based metadata and catalogue component of spatial data infrastructures. pycsw is Open Source, released under an MIT license, and runs on all major platforms (Windows, Linux, Mac OS X). -WWW: https://pycsw.org/ -WWW: https://github.com/geopython/pycsw +See also: https://github.com/geopython/pycsw diff --git a/science/py-pydicom/pkg-descr b/science/py-pydicom/pkg-descr index b8b083c8d579..585501bcd6b8 100644 --- a/science/py-pydicom/pkg-descr +++ b/science/py-pydicom/pkg-descr @@ -3,5 +3,3 @@ made for inspecting and modifying DICOM files in an easy "pythonic" way. The modifications can be written again to a new file. As a pure python package, it should run anywhere python runs without any other requirements. - -WWW: https://github.com/pydicom/pydicom diff --git a/science/py-pygeodesy/pkg-descr b/science/py-pygeodesy/pkg-descr index 3ef892e7314e..7a1f1f7a1f56 100644 --- a/science/py-pygeodesy/pkg-descr +++ b/science/py-pygeodesy/pkg-descr @@ -2,5 +2,3 @@ PyGeodesy is a pure Python implementation of geodesy tools for various ellipsoidal and spherical earth models using precision trigonometric, vector-based and approximate methods for geodetic (lat-/longitude) and geocentric cartesian (x/y/z) coordinates. - -WWW: https://github.com/mrJean1/PyGeodesy diff --git a/science/py-pygeometa/pkg-descr b/science/py-pygeometa/pkg-descr index 42c4d8ad56ea..a3268a89d4df 100644 --- a/science/py-pygeometa/pkg-descr +++ b/science/py-pygeometa/pkg-descr @@ -1,3 +1 @@ pygeometa is a Python package to generate metadata for geospatial datasets. - -WWW: https://github.com/geopython/pygeometa diff --git a/science/py-pygmo2/pkg-descr b/science/py-pygmo2/pkg-descr index bb509e75b628..14ef90d47c80 100644 --- a/science/py-pygmo2/pkg-descr +++ b/science/py-pygmo2/pkg-descr @@ -14,5 +14,3 @@ multiple objective, continuous and integer optimization problems, stochastic and deterministic problems, as well as to perform research on novel algorithms and paradigms, and easily compare them to state-of-the-art implementations of established ones. - -WWW: https://esa.github.io/pygmo2/ diff --git a/science/py-pyked/pkg-descr b/science/py-pyked/pkg-descr index 0fb162b5db5f..81906b7575f6 100644 --- a/science/py-pyked/pkg-descr +++ b/science/py-pyked/pkg-descr @@ -2,5 +2,3 @@ PyKED is a Python package that provides the reference implementation of the interface to ChemKED files. PyKED reads ChemKED files, validates their structure and content, and allows the user to interact with the data contained in the ChemKED file. - -WWW: https://pr-omethe-us.github.io/PyKED/ diff --git a/science/py-pymatgen/pkg-descr b/science/py-pymatgen/pkg-descr index 1b05f41df93f..d29c58c44fc5 100644 --- a/science/py-pymatgen/pkg-descr +++ b/science/py-pymatgen/pkg-descr @@ -10,5 +10,3 @@ for materials analysis. These are some of the main features: * Electronic structure analyses, such as density of states and band structure. * Integration with the Materials Project REST API, Crystallography Open Database. - -WWW: https://pymatgen.org/ diff --git a/science/py-pymbd/pkg-descr b/science/py-pymbd/pkg-descr index b0ac6664d8fd..f168cdcf249d 100644 --- a/science/py-pymbd/pkg-descr +++ b/science/py-pymbd/pkg-descr @@ -8,5 +8,3 @@ implementation, with support for analytical gradients and distributed parallelism, and additional functionality beyond the MBD method itself. It provides a low-level and a high-level Fortran API, as well as a C API. Furthermore, Python bindings to the C API are provided. - -WWW: https://github.com/libmbd/libmbd diff --git a/science/py-pymol/pkg-descr b/science/py-pymol/pkg-descr index d6a1696cf13e..4cbb19da42b9 100644 --- a/science/py-pymol/pkg-descr +++ b/science/py-pymol/pkg-descr @@ -5,5 +5,3 @@ and movies. Open Source PyMOL is free to everyone! This version represents the community-supported open source distribution of the closed source commercial product PyMOL. - -WWW: https://pymol.org/2/ diff --git a/science/py-pyosf/pkg-descr b/science/py-pyosf/pkg-descr index 2e447e4c62c4..f6a1c4cd2f95 100644 --- a/science/py-pyosf/pkg-descr +++ b/science/py-pyosf/pkg-descr @@ -3,5 +3,3 @@ pyosf is a pure Python library for simple file sync with Open Science Framework. This package is for simple synchronisation of files from the local file space to the Open Science Framework (OSF). There is a more complex fully-featured sync package by the Center for Open Science, who created OSF, called "osf-sync". - -WWW: https://github.com/psychopy/pyosf diff --git a/science/py-pyprecice/pkg-descr b/science/py-pyprecice/pkg-descr index c50dfb4f0780..677e93841d38 100644 --- a/science/py-pyprecice/pkg-descr +++ b/science/py-pyprecice/pkg-descr @@ -2,5 +2,3 @@ Python bindings for preCICE, an open-source coupling library for partitioned multi-physics simulations, including, but not restricted to fluid-structure interaction and conjugate heat transfer simulations. - -WWW: https://precice.org/ diff --git a/science/py-pyqubo/pkg-descr b/science/py-pyqubo/pkg-descr index af60236d0664..2dc99cbde771 100644 --- a/science/py-pyqubo/pkg-descr +++ b/science/py-pyqubo/pkg-descr @@ -4,5 +4,3 @@ expressions easily. Some of the features of PyQUBO: * fully integrated with Ocean SDK * automatic validation of constraints * placeholder for parameter tuning - -WWW: https://pyqubo.readthedocs.io/en/latest/ diff --git a/science/py-pysal/pkg-descr b/science/py-pysal/pkg-descr index 5dbacb7327aa..52b55e84fa5d 100644 --- a/science/py-pysal/pkg-descr +++ b/science/py-pysal/pkg-descr @@ -1,5 +1,3 @@ PySAL is a cross-platform library of spatial analysis functions written in Python. It is intended to support the development of high level applications for spatial analysis. - -WWW: https://pysal.org/ diff --git a/science/py-pyscf/pkg-descr b/science/py-pyscf/pkg-descr index 68196e180664..8627a972ce6e 100644 --- a/science/py-pyscf/pkg-descr +++ b/science/py-pyscf/pkg-descr @@ -2,5 +2,3 @@ PyMOL is a Python-enhanced molecular graphics tool. It excels at 3D visualization of proteins, small molecules, density, surfaces, and trajectories. It also includes molecular editing, ray tracing, and movies. Open Source PyMOL is free to everyone! - -WWW: https://www.pymol.org/ diff --git a/science/py-pyteomics/pkg-descr b/science/py-pyteomics/pkg-descr index 6645cd4a8bec..f2f7b289c4ad 100644 --- a/science/py-pyteomics/pkg-descr +++ b/science/py-pyteomics/pkg-descr @@ -18,5 +18,4 @@ project's key features is Python itself, an open source language increasingly popular in scientific programming. The main applications of the library are reproducible statistical data analysis and rapid software prototyping. -WWW: https://pyteomics.readthedocs.io/ -WWW: https://github.com/levitsky/pyteomics +See also: https://github.com/levitsky/pyteomics diff --git a/science/py-qcelemental/pkg-descr b/science/py-qcelemental/pkg-descr index aaa33f20985e..e509d286c42a 100644 --- a/science/py-qcelemental/pkg-descr +++ b/science/py-qcelemental/pkg-descr @@ -7,5 +7,3 @@ NIST-published JSON file). This project also contains a generator, validator, and translator for Molecule QCSchema. - -WWW: https://github.com/MolSSI/QCElemental diff --git a/science/py-qcengine/pkg-descr b/science/py-qcengine/pkg-descr index 5a2b4b6545b7..695046337dea 100644 --- a/science/py-qcengine/pkg-descr +++ b/science/py-qcengine/pkg-descr @@ -8,5 +8,3 @@ Currently available compute backends for single results are: * TorchANI * Molecular Mechanics: * RDKit - -WWW: https://github.com/MolSSI/QCEngine diff --git a/science/py-qiskit-aer/pkg-descr b/science/py-qiskit-aer/pkg-descr index 31b35d51b48f..774f43ea9a74 100644 --- a/science/py-qiskit-aer/pkg-descr +++ b/science/py-qiskit-aer/pkg-descr @@ -3,5 +3,3 @@ at the level of pulses, circuits, and application modules. Qiskit Aer is one of Qiskit components: it is a high performance simulator for quantum circuits that includes noise models. - -WWW: https://qiskit.org/ diff --git a/science/py-qiskit-experiments/pkg-descr b/science/py-qiskit-experiments/pkg-descr index 4651d7383666..7aaa4a1f1e4c 100644 --- a/science/py-qiskit-experiments/pkg-descr +++ b/science/py-qiskit-experiments/pkg-descr @@ -4,5 +4,3 @@ at the level of pulses, circuits, and application modules. Qiskit Experiments is one of Qiskit components. Qiskit Experiments is a repository that builds tools for building, running, and analysis of experiments on noisy quantum computers. - -WWW: https://qiskit.org/ diff --git a/science/py-qiskit-finance/pkg-descr b/science/py-qiskit-finance/pkg-descr index 1822f3a154b6..7dd783b69932 100644 --- a/science/py-qiskit-finance/pkg-descr +++ b/science/py-qiskit-finance/pkg-descr @@ -2,5 +2,3 @@ Qiskit [quiss-kit] is an open-source SDK for working with quantum computers at the level of pulses, circuits, and application modules. Qiskit Finance is one of Qiskit components for quantum finance problems. - -WWW: https://qiskit.org/ diff --git a/science/py-qiskit-ibm-experiment/pkg-descr b/science/py-qiskit-ibm-experiment/pkg-descr index 40df8406190c..b2f7a6bdd3ea 100644 --- a/science/py-qiskit-ibm-experiment/pkg-descr +++ b/science/py-qiskit-ibm-experiment/pkg-descr @@ -3,5 +3,3 @@ at the level of pulses, circuits, and application modules. Qiskit IBM Experiment service is one of Qiskit components. It contains a service that allows accessing the IBM Quantum experiment database. - -WWW: https://qiskit.org/ diff --git a/science/py-qiskit-ibm-provider/pkg-descr b/science/py-qiskit-ibm-provider/pkg-descr index b47f4004e4fa..404fe5d5d1a0 100644 --- a/science/py-qiskit-ibm-provider/pkg-descr +++ b/science/py-qiskit-ibm-provider/pkg-descr @@ -3,5 +3,3 @@ at the level of pulses, circuits, and application modules. qiskit-ibmq-provider is a Qiskit Provider for accessing the quantum devices and simulators. - -WWW: https://qiskit.org/ diff --git a/science/py-qiskit-ibmq-provider/pkg-descr b/science/py-qiskit-ibmq-provider/pkg-descr index b47f4004e4fa..404fe5d5d1a0 100644 --- a/science/py-qiskit-ibmq-provider/pkg-descr +++ b/science/py-qiskit-ibmq-provider/pkg-descr @@ -3,5 +3,3 @@ at the level of pulses, circuits, and application modules. qiskit-ibmq-provider is a Qiskit Provider for accessing the quantum devices and simulators. - -WWW: https://qiskit.org/ diff --git a/science/py-qiskit-nature/pkg-descr b/science/py-qiskit-nature/pkg-descr index 36cdb1b40940..2332f0cc7dd3 100644 --- a/science/py-qiskit-nature/pkg-descr +++ b/science/py-qiskit-nature/pkg-descr @@ -19,5 +19,3 @@ first expressed in the second quantization formalism, comprising fermionic excitation and annihilation operators. These can then be mapped to the qubit formalism using a variety of mappings such as Jordan-Wigner, Parity, and more, in readiness for the quantum computation. - -WWW: https://qiskit.org/ diff --git a/science/py-qiskit-optimization/pkg-descr b/science/py-qiskit-optimization/pkg-descr index 7c1e9569f421..29b8375f18a4 100644 --- a/science/py-qiskit-optimization/pkg-descr +++ b/science/py-qiskit-optimization/pkg-descr @@ -6,5 +6,3 @@ high-level modeling of optimization problems, with automatic conversion of problems to different required representations, to a suite of easy-to-use quantum optimization algorithms that are ready to run on classical simulators, as well as on real quantum devices via Qiskit. - -WWW: https://qiskit.org/ diff --git a/science/py-qiskit-terra/pkg-descr b/science/py-qiskit-terra/pkg-descr index b09607bb4692..723fdd8a97fd 100644 --- a/science/py-qiskit-terra/pkg-descr +++ b/science/py-qiskit-terra/pkg-descr @@ -2,5 +2,3 @@ Qiskit [quiss-kit] is an open-source SDK for working with quantum computers at the level of pulses, circuits, and application modules. Qiskit Terra is one of Qiskit components. - -WWW: https://qiskit.org/ diff --git a/science/py-qiskit/pkg-descr b/science/py-qiskit/pkg-descr index a498c08fb827..55e198458bb7 100644 --- a/science/py-qiskit/pkg-descr +++ b/science/py-qiskit/pkg-descr @@ -2,5 +2,3 @@ Qiskit [quiss-kit] is an open-source SDK for working with quantum computers at the level of pulses, circuits, and application modules. This is a meta-package that installs Qiskit submodules. - -WWW: https://qiskit.org/ diff --git a/science/py-qspin/pkg-descr b/science/py-qspin/pkg-descr index f228feef76ea..aea481e32030 100644 --- a/science/py-qspin/pkg-descr +++ b/science/py-qspin/pkg-descr @@ -8,5 +8,3 @@ minimum" lectures and other web resources. Art Friedman, Basic Books, 2014. (mostly chapters 6&7) * http://theoreticalminimum.com/courses/quantum-mechanics/2012/winter/lecture-6 and lecture 7 - -WWW: https://bitbucket.org/donald_gavel/qspin diff --git a/science/py-quantities/pkg-descr b/science/py-quantities/pkg-descr index 4753f167f583..e825acf512ed 100644 --- a/science/py-quantities/pkg-descr +++ b/science/py-quantities/pkg-descr @@ -5,5 +5,3 @@ on the popular numpy library and is designed to work with numpy ufuncs, many of which are already supported. Quantities is actively developed, and while the current features and API are stable, test coverage is incomplete so the package is not suggested for mission-critical applications. - -WWW: https://github.com/python-quantities/python-quantities diff --git a/science/py-rmf/pkg-descr b/science/py-rmf/pkg-descr index e95cceab4e79..5bf07614fdb2 100644 --- a/science/py-rmf/pkg-descr +++ b/science/py-rmf/pkg-descr @@ -2,5 +2,3 @@ The Python binding for Rich Molecular Format (RMF) file format library storing hierarchical molecular data (such as atomic or coarse grained representations of proteins), along with markup, including geometry and score data. - -WWW: https://integrativemodeling.org/rmf/ diff --git a/science/py-rmsd/pkg-descr b/science/py-rmsd/pkg-descr index 52e409fd4591..15e2bd8704b0 100644 --- a/science/py-rmsd/pkg-descr +++ b/science/py-rmsd/pkg-descr @@ -4,5 +4,3 @@ The root-mean-square deviation (RMSD) is calculated, using Kabsch algorithm (1976) or Quaternion algorithm (1991) for rotation, between two Cartesian coordinates in either .xyz or .pdb format, resulting in the minimal RMSD. - -WWW: https://github.com/charnley/rmsd diff --git a/science/py-ruffus/pkg-descr b/science/py-ruffus/pkg-descr index 8a1a528dfa56..dfd1453897c8 100644 --- a/science/py-ruffus/pkg-descr +++ b/science/py-ruffus/pkg-descr @@ -9,5 +9,3 @@ function. Each Python function can be called in parallel to run multiple jobs. Ruffus was originally designed for use in bioinformatics to analyse multiple genome data sets. - -WWW: http://www.ruffus.org.uk diff --git a/science/py-scikit-fuzzy/pkg-descr b/science/py-scikit-fuzzy/pkg-descr index e0c909921c6f..4ae0d2a544ef 100644 --- a/science/py-scikit-fuzzy/pkg-descr +++ b/science/py-scikit-fuzzy/pkg-descr @@ -6,5 +6,3 @@ The goals of scikit-fuzzy are: and implemented fuzzy logic algorithms * To increase the attractiveness of scientific Python as a valid alternative to closed-source options. - -WWW: https://github.com/scikit-fuzzy/scikit-fuzzy/ diff --git a/science/py-scikit-learn/pkg-descr b/science/py-scikit-learn/pkg-descr index 7a039d4c0e11..d61fbebff6aa 100644 --- a/science/py-scikit-learn/pkg-descr +++ b/science/py-scikit-learn/pkg-descr @@ -3,5 +3,3 @@ algorithms in the tightly-knit scientific Python world (numpy, scipy, matplotlib). It aims to provide simple and efficient solutions to learning problems, accessible to everybody and reusable in various contexts: machine-learning as a versatile tool for science and engineering. - -WWW: https://scikit-learn.org/ diff --git a/science/py-scikit-optimize/pkg-descr b/science/py-scikit-optimize/pkg-descr index b1b11ecb822c..7ad9890134b0 100644 --- a/science/py-scikit-optimize/pkg-descr +++ b/science/py-scikit-optimize/pkg-descr @@ -2,5 +2,3 @@ Scikit-Optimize, or skopt, is a simple and efficient library to minimize (very) expensive and noisy black-box functions. It implements several methods for sequential model-based optimization. skopt aims to be accessible and easy to use in many contexts. - -WWW: https://github.com/scikit-optimize/scikit-optimize diff --git a/science/py-scikit-sparse/pkg-descr b/science/py-scikit-sparse/pkg-descr index f95bc8c170bf..79eda251457e 100644 --- a/science/py-scikit-sparse/pkg-descr +++ b/science/py-scikit-sparse/pkg-descr @@ -1,3 +1 @@ scikits-sparse is a Python module for sparse matrix calculations. - -WWW: https://github.com/scikit-sparse/scikit-sparse diff --git a/science/py-scimath/pkg-descr b/science/py-scimath/pkg-descr index 7de815f02e05..13da61b9643f 100644 --- a/science/py-scimath/pkg-descr +++ b/science/py-scimath/pkg-descr @@ -3,5 +3,3 @@ mathematical calculations, beyond the capabilities offered by SciPy. * enthought.interpolate * enthought.mathematics * enthought.units - -WWW: https://pypi.org/project/scimath/ diff --git a/science/py-scipy/pkg-descr b/science/py-scipy/pkg-descr index 4e6b63b78220..6f4ef18a9aba 100644 --- a/science/py-scipy/pkg-descr +++ b/science/py-scipy/pkg-descr @@ -5,5 +5,3 @@ science and engineering modules together as a single package. SciPy includes modules for graphics and plotting, optimization, integration, special functions, signal and image processing, genetic algorithms, ODE solvers, and others. - -WWW: https://www.scipy.org/ diff --git a/science/py-scoria/pkg-descr b/science/py-scoria/pkg-descr index ab09f3b6f95c..39a55fa1c012 100644 --- a/science/py-scoria/pkg-descr +++ b/science/py-scoria/pkg-descr @@ -1,4 +1,2 @@ The scoria library is a lightweight python code base designed for importing, manipulating, and exporting molecular models. - -WWW: https://git.durrantlab.pitt.edu/jdurrant/scoria diff --git a/science/py-segregation/pkg-descr b/science/py-segregation/pkg-descr index 1a184877f74c..ae70aa66a206 100644 --- a/science/py-segregation/pkg-descr +++ b/science/py-segregation/pkg-descr @@ -4,5 +4,4 @@ The PySAL segregation package is a tool for analyzing patterns of urban segregation. With only a few lines of code, segregation users can calculate over 40 segregation measures from simple to state-of-the art. -WWW: https://pysal.org/segregation/ -WWW: https://github.com/pysal/segregation +See also: https://github.com/pysal/segregation diff --git a/science/py-segyio/pkg-descr b/science/py-segyio/pkg-descr index aabc03968b61..5debb86826bc 100644 --- a/science/py-segyio/pkg-descr +++ b/science/py-segyio/pkg-descr @@ -1,4 +1,2 @@ Pythin binding for segyio, a small LGPL licensed C library for easy interaction with SEG-Y and Seismic Unix formatted seismic data. - -WWW: https://github.com/equinor/segyio diff --git a/science/py-sklearn-pandas/pkg-descr b/science/py-sklearn-pandas/pkg-descr index ee430561a9c8..ac5bb26efc30 100644 --- a/science/py-sklearn-pandas/pkg-descr +++ b/science/py-sklearn-pandas/pkg-descr @@ -1,5 +1,3 @@ This module provides a bridge between Scikit-Learn's machine learning methods and pandas-style Data Frames. In particular, it provides a way to map DataFrame columns to transformations, which are later recombined into features. - -WWW: https://github.com/scikit-learn-contrib/sklearn-pandas diff --git a/science/py-skrebate/pkg-descr b/science/py-skrebate/pkg-descr index 2006c2996184..af91c9c7b065 100644 --- a/science/py-skrebate/pkg-descr +++ b/science/py-skrebate/pkg-descr @@ -5,5 +5,3 @@ part of a machine learning pipeline (supervised learning). Presently this includes the following core RBAs: ReliefF, SURF, SURF*, MultiSURF*, and MultiSURF. Additionally, an implementation of the iterative TuRF mechanism and VLSRelief is included. - -WWW: https://github.com/EpistasisLab/scikit-rebate diff --git a/science/py-spaghetti/pkg-descr b/science/py-spaghetti/pkg-descr index 6c5fe41869a8..ec5f395dfdd4 100644 --- a/science/py-spaghetti/pkg-descr +++ b/science/py-spaghetti/pkg-descr @@ -6,5 +6,4 @@ Analysis Library), it is under active development for the inclusion of newly proposed methods for building graph-theoretic networks and the analysis of network events. -WWW: https://pysal.org/spaghetti/ -WWW: https://github.com/pysal/spaghetti +See also: https://github.com/pysal/spaghetti diff --git a/science/py-spglib/pkg-descr b/science/py-spglib/pkg-descr index 582f287976b6..d173d63a6063 100644 --- a/science/py-spglib/pkg-descr +++ b/science/py-spglib/pkg-descr @@ -2,5 +2,3 @@ Python library for finding and handling crystal symmetries. Spglib for python wraps the same C code that exists in the port science/spglib. - -WWW: https://atztogo.github.io/spglib/ diff --git a/science/py-tensorflow/pkg-descr b/science/py-tensorflow/pkg-descr index 84fa309b7715..8887e9db6d0d 100644 --- a/science/py-tensorflow/pkg-descr +++ b/science/py-tensorflow/pkg-descr @@ -8,5 +8,3 @@ engineers working on the Google Brain Team within Google's Machine Intelligence research organization for the purposes of conducting machine learning and deep neural networks research, but the system is general enough to be applicable in a wide variety of other domains as well. - -WWW: https://www.tensorflow.org diff --git a/science/py-thewalrus/pkg-descr b/science/py-thewalrus/pkg-descr index 0dca86f1a12c..606ddc741ed8 100644 --- a/science/py-thewalrus/pkg-descr +++ b/science/py-thewalrus/pkg-descr @@ -1,4 +1,2 @@ thewalrus is a library for the calculation of hafnians, Hermite polynomials and Gaussian boson sampling. - -WWW: https://github.com/XanaduAI/thewalrus diff --git a/science/py-tobler/pkg-descr b/science/py-tobler/pkg-descr index 1ab3d9903a78..f63914fc338a 100644 --- a/science/py-tobler/pkg-descr +++ b/science/py-tobler/pkg-descr @@ -1,5 +1,4 @@ tobler is a library for areal interpolation and dasymetric mapping. The name is an homage to the legendary geographer Waldo Tobler. -WWW: https://pysal.org/tobler/ -WWW: https://github.com/pysal/tobler +See also: https://github.com/pysal/tobler diff --git a/science/py-trainstation/pkg-descr b/science/py-trainstation/pkg-descr index c1b50cb6a53c..0313e1a46787 100644 --- a/science/py-trainstation/pkg-descr +++ b/science/py-trainstation/pkg-descr @@ -6,5 +6,3 @@ construction of force constant and cluster expansions. Since it has proven to be valuable in more general contexts and to simplify the maintenance of the two aforementioned packages, the functionality has been moved into a separate package. - -WWW: https://trainstation.materialsmodeling.org/ diff --git a/science/py-tweedledum/pkg-descr b/science/py-tweedledum/pkg-descr index 9a92e5f057f8..53dca0c39bfe 100644 --- a/science/py-tweedledum/pkg-descr +++ b/science/py-tweedledum/pkg-descr @@ -2,5 +2,3 @@ tweedledum is a library for synthesis, compilation, and optimization of quantum circuits. The library is written to be scalable up to problem sizes in which quantum circuits outperform classical ones. Also, it is meant to be used both independently and alongside established tools. - -WWW: https://github.com/boschmitt/tweedledum diff --git a/science/py-veusz/pkg-descr b/science/py-veusz/pkg-descr index f693dcc088b3..914fc76e9769 100644 --- a/science/py-veusz/pkg-descr +++ b/science/py-veusz/pkg-descr @@ -5,5 +5,3 @@ The program runs under Unix/Linux, Windows or Mac OS X, and binaries are provided. Data can be read from text, CSV or FITS files, and data can be manipulated or examined from within the application. - -WWW: https://veusz.github.io/ diff --git a/science/pybrain/pkg-descr b/science/pybrain/pkg-descr index 746da1ab914f..92c6060c9e98 100644 --- a/science/pybrain/pkg-descr +++ b/science/pybrain/pkg-descr @@ -7,5 +7,3 @@ PyBrain is short for Python-Based Reinforcement Learning, Artificial Intelligence and Neural Network Library. In fact, we came up with the name first and later reverse-engineerer this quite descriptive "Backronym". - -WWW: http://pybrain.org/ diff --git a/science/pynn/pkg-descr b/science/pynn/pkg-descr index 04cf05b46031..ff22e99e1d70 100644 --- a/science/pynn/pkg-descr +++ b/science/pynn/pkg-descr @@ -1,4 +1,2 @@ PyNN (pronounced 'pine') is a simulator-independent language for building neuronal network models. - -WWW: http://neuralensemble.org/PyNN diff --git a/science/q/pkg-descr b/science/q/pkg-descr index 0f832a3222cd..0554df351f7a 100644 --- a/science/q/pkg-descr +++ b/science/q/pkg-descr @@ -4,5 +4,3 @@ specific kinds of free energy calculations: 2. Empirical Valence Bond (EVB) 3. Linear Interaction Energies (LIE) 4. Quantum Classical Path (QCP) - -WWW: https://github.com/qusers/Q6 diff --git a/science/qbox/pkg-descr b/science/qbox/pkg-descr index 4485d25adf3a..5968cb2367e7 100644 --- a/science/qbox/pkg-descr +++ b/science/qbox/pkg-descr @@ -3,5 +3,3 @@ dynamics (FPMD) based on the plane-wave, pseudopotential formalism. Qbox is designed for operation on large parallel computers. Qbox is developed in the Gygi Research Group at UC Davis. - -WWW: http://qboxcode.org/ diff --git a/science/qcl/pkg-descr b/science/qcl/pkg-descr index d5acfb60d408..7963425cb71d 100644 --- a/science/qcl/pkg-descr +++ b/science/qcl/pkg-descr @@ -3,5 +3,3 @@ quantum computers, with a syntax derived from classical procedural languages like C or Pascal. This allows for the complete implementation and simulation of quantum algorithms (including classical components) in one consistent formalism. - -WWW: http://tph.tuwien.ac.at/~oemer/qcl.html diff --git a/science/qiskit-aer/pkg-descr b/science/qiskit-aer/pkg-descr index ccf91d41e437..6475ef43b79c 100644 --- a/science/qiskit-aer/pkg-descr +++ b/science/qiskit-aer/pkg-descr @@ -3,5 +3,3 @@ software stack. It contains optimized C++ simulator backends for executing circuits compiled in Qiskit Terra, and tools for constructing highly configurable noise models for performing realistic noisy simulations of the errors that occur during execution on real devices. - -WWW: https://qiskit.org/aer/ diff --git a/science/qmcpack/pkg-descr b/science/qmcpack/pkg-descr index a1dff3c612b0..00ce4891b8fe 100644 --- a/science/qmcpack/pkg-descr +++ b/science/qmcpack/pkg-descr @@ -9,5 +9,3 @@ than methods such as density functional theory, but at a trade-off of much greater computational expense. Distinct from many other correlated many-body methods, QMC methods are readily applicable to both bulk (periodic) and isolated molecular systems. - -WWW: https://www.qmcpack.org/ diff --git a/science/quantum-espresso-pseudopotentials/pkg-descr b/science/quantum-espresso-pseudopotentials/pkg-descr index 31fb29844afb..2fc3119a5e69 100644 --- a/science/quantum-espresso-pseudopotentials/pkg-descr +++ b/science/quantum-espresso-pseudopotentials/pkg-descr @@ -5,5 +5,3 @@ the Quantum Espresso suite. Quantum Espresso is an integrated suite of open-source computer codes for electronic-structure calculations and materials modeling at the nanoscale. It is based on density-functional theory, plane waves, and pseudopotentials. - -WWW: https://www.quantum-espresso.org/ diff --git a/science/quantum-espresso/pkg-descr b/science/quantum-espresso/pkg-descr index 9cf2944c4140..f8dd605893d0 100644 --- a/science/quantum-espresso/pkg-descr +++ b/science/quantum-espresso/pkg-descr @@ -13,5 +13,3 @@ their own ideas into existing codes. You probably also need to install the Quantum ESPRESSO pseudopotentials library: quantum-espresso-pseudopotentials (science/quantum-espresso-pseudopotentials). - -WWW: https://www.quantum-espresso.org/ diff --git a/science/quantum-jet/pkg-descr b/science/quantum-jet/pkg-descr index d2837c52e1a1..2d270ebe393e 100644 --- a/science/quantum-jet/pkg-descr +++ b/science/quantum-jet/pkg-descr @@ -1,4 +1,2 @@ Jet is a cross-platform library for simulating quantum circuits using tensor network contractions. - -WWW: https://github.com/XanaduAI/jet diff --git a/science/qwalk/pkg-descr b/science/qwalk/pkg-descr index 68877e8e370a..f0e473e2929f 100644 --- a/science/qwalk/pkg-descr +++ b/science/qwalk/pkg-descr @@ -2,5 +2,3 @@ QWalk is a program developed to perform high accuracy quantum Monte Carlo calculations of electronic structure in molecules and solids. It is specifically designed as a research vehicle for new algorithms and method developments, as well as being able to scale up to large system sizes. - -WWW: https://qwalk.github.io/mainline/ diff --git a/science/rdkit/pkg-descr b/science/rdkit/pkg-descr index 0996cc1cb0f7..8dcb8fe12f9d 100644 --- a/science/rdkit/pkg-descr +++ b/science/rdkit/pkg-descr @@ -17,5 +17,3 @@ Features: * Bemis and Murcko scaffold determination * Salt stripping * Functional-group filters - -WWW: http://www.rdkit.org/ diff --git a/science/rmf/pkg-descr b/science/rmf/pkg-descr index 0325d8ab7356..940f4cab9e29 100644 --- a/science/rmf/pkg-descr +++ b/science/rmf/pkg-descr @@ -2,5 +2,3 @@ The library provides support for the Rich Molecular Format (RMF) file format for storing hierarchical molecular data (such as atomic or coarse grained representations of proteins), along with markup, including geometry and score data. - -WWW: https://integrativemodeling.org/rmf/ diff --git a/science/rubygem-ai4r/pkg-descr b/science/rubygem-ai4r/pkg-descr index 23abef88de91..b8425b551381 100644 --- a/science/rubygem-ai4r/pkg-descr +++ b/science/rubygem-ai4r/pkg-descr @@ -19,5 +19,3 @@ Artificial intelligence fields. It implements: - Single linkage, Complete linkage, Average linkage, Weighted Average linkage, Centroid linkage, Median linkage, Ward's method linkage - Diana (Divisive Analysis) - -WWW: http://www.ai4r.org/ diff --git a/science/rubygem-cdo/pkg-descr b/science/rubygem-cdo/pkg-descr index 8c5abda7b8cb..b121ee5c82cc 100644 --- a/science/rubygem-cdo/pkg-descr +++ b/science/rubygem-cdo/pkg-descr @@ -1,4 +1,3 @@ Ruby binding to CDO (Climate Data Operators) -WWW: https://code.mpimet.mpg.de/projects/cdo/wiki/Cdo%7Brbpy%7D -WWW: https://github.com/Try2Code/cdo-bindings +See also: https://github.com/Try2Code/cdo-bindings diff --git a/science/rubygem-rgeo-geojson/pkg-descr b/science/rubygem-rgeo-geojson/pkg-descr index 2f2e39fe23dd..bde9dd40bb8e 100644 --- a/science/rubygem-rgeo-geojson/pkg-descr +++ b/science/rubygem-rgeo-geojson/pkg-descr @@ -1,4 +1,2 @@ RGeo::GeoJSON is an extension to the RGeo gem that provides GeoJSON encoding and decoding. - -WWW: https://github.com/rgeo/rgeo-geojson diff --git a/science/rubygem-rgeo-proj4/pkg-descr b/science/rubygem-rgeo-proj4/pkg-descr index 1a3c33768890..f3d6fc69ec14 100644 --- a/science/rubygem-rgeo-proj4/pkg-descr +++ b/science/rubygem-rgeo-proj4/pkg-descr @@ -1,3 +1 @@ RGeo::Proj4 contains proj.4 extensions to the RGeo gem. - -WWW: https://github.com/rgeo/rgeo-proj4 diff --git a/science/rubygem-rgeo-shapefile/pkg-descr b/science/rubygem-rgeo-shapefile/pkg-descr index 7beb42c88912..988b48c4dd2a 100644 --- a/science/rubygem-rgeo-shapefile/pkg-descr +++ b/science/rubygem-rgeo-shapefile/pkg-descr @@ -1,4 +1,2 @@ RGeo::Shapefile is an optional module for RGeo for reading geospatial data from ESRI shapefiles. - -WWW: https://github.com/rgeo/rgeo-shapefile diff --git a/science/rubygem-rgeo/pkg-descr b/science/rubygem-rgeo/pkg-descr index a51e0e629bc7..8e45b3e3b53b 100644 --- a/science/rubygem-rgeo/pkg-descr +++ b/science/rubygem-rgeo/pkg-descr @@ -17,5 +17,3 @@ Use the core rgeo gem to: map display and data analysis. - Read and write location data in the WKT and WKB representations used by spatial databases. - -WWW: https://github.com/rgeo/rgeo diff --git a/science/rubygem-ruby-dcl/pkg-descr b/science/rubygem-ruby-dcl/pkg-descr index 236d7a6c9d35..b6839732df98 100644 --- a/science/rubygem-ruby-dcl/pkg-descr +++ b/science/rubygem-ruby-dcl/pkg-descr @@ -1,3 +1 @@ This is a Ruby interface to the scientific graphic library DCL. - -WWW: http://ruby.gfd-dennou.org/products/ruby-dcl/ diff --git a/science/rubygem-ruby-netcdf/pkg-descr b/science/rubygem-ruby-netcdf/pkg-descr index ad493ddd96b3..867ed2bf6dcc 100644 --- a/science/rubygem-ruby-netcdf/pkg-descr +++ b/science/rubygem-ruby-netcdf/pkg-descr @@ -1,3 +1 @@ This is a Ruby interface to the NetCDF scientific IO library. - -WWW: https://www.gfd-dennou.org/arch/ruby/products/ruby-netcdf/ diff --git a/science/scidavis/pkg-descr b/science/scidavis/pkg-descr index b98997e3497e..c043e3a8af76 100644 --- a/science/scidavis/pkg-descr +++ b/science/scidavis/pkg-descr @@ -2,5 +2,3 @@ SciDAVis is a free cross-platform program for two- and three-dimensional graphical presentation of data sets and for data analysis. It combines easy-to-use graphical user interface with powerful features such as Python scripting. - -WWW: http://scidavis.sourceforge.net diff --git a/science/segyio/pkg-descr b/science/segyio/pkg-descr index 3d78ad025103..10a2de4ce8e6 100644 --- a/science/segyio/pkg-descr +++ b/science/segyio/pkg-descr @@ -3,5 +3,3 @@ Seismic Unix formatted seismic data, with language bindings for Python and Matlab. Segyio is an attempt to create an easy-to-use, embeddable, community-oriented library for seismic applications. Features are added as they are needed; suggestions and contributions of all kinds are very welcome. - -WWW: https://github.com/equinor/segyio diff --git a/science/serac/pkg-descr b/science/serac/pkg-descr index 1c47ed569d54..1bfa896f9bb6 100644 --- a/science/serac/pkg-descr +++ b/science/serac/pkg-descr @@ -3,5 +3,3 @@ purpose is to investigate multiphysics abstraction strategies and implicit finite element-based algorithm development for emerging computing architectures. It also serves as a proxy-app for LLNL's Smith code and heavily leverages the MFEM finite element library. - -WWW: https://github.com/LLNL/serac diff --git a/science/shelxle/pkg-descr b/science/shelxle/pkg-descr index e85a94b0dcad..80c25021a93c 100644 --- a/science/shelxle/pkg-descr +++ b/science/shelxle/pkg-descr @@ -9,5 +9,3 @@ and stereo modes, and a novel way of displaying disorder extending over special positions. ShelXle is completely compatible with all features of SHELXL and is written entirely in C++ using the Qt and FFTW libraries. It is available at no cost for Windows, Linux and Mac-OS X and as source code. - -WWW: https://www.shelxle.org/shelx/eingabe.php diff --git a/science/siconos/pkg-descr b/science/siconos/pkg-descr index f219dd77f43b..84302f775060 100644 --- a/science/siconos/pkg-descr +++ b/science/siconos/pkg-descr @@ -14,5 +14,3 @@ Other applications are found in Systems and Control (hybrid systems, differential inclusions, optimal control with state constraints), Optimization (Complementarity systems and Variational inequalities), Fluid Mechanics, and Computer Graphics. - -WWW: https://nonsmooth.gricad-pages.univ-grenoble-alpes.fr/siconos/index.html diff --git a/science/siesta/pkg-descr b/science/siesta/pkg-descr index a903c4efae60..ebfae79b429b 100644 --- a/science/siesta/pkg-descr +++ b/science/siesta/pkg-descr @@ -6,5 +6,3 @@ algorithms which can be applied to suitable systems. A very important feature of the code is that its accuracy and cost can be tuned in a wide range, from quick exploratory calculations to highly accurate simulations matching the quality of other approaches, such as plane-wave and all-electron methods. - -WWW: https://icmab.es/siesta diff --git a/science/sigrok-cli/pkg-descr b/science/sigrok-cli/pkg-descr index bff04f5e2e7f..db80a60462bf 100644 --- a/science/sigrok-cli/pkg-descr +++ b/science/sigrok-cli/pkg-descr @@ -9,5 +9,3 @@ GPIB interfaces, and more. sigrok-cli is a command-line tool written in C, which uses both libsigrok and libsigrokdecode to provide the basic sigrok functionality from the command-line. Among other things, it's useful for scripting purposes. - -WWW: https://sigrok.org/ diff --git a/science/sigrok-firmware-fx2lafw/pkg-descr b/science/sigrok-firmware-fx2lafw/pkg-descr index 6e23d24de1e2..2befe6d85b5b 100644 --- a/science/sigrok-firmware-fx2lafw/pkg-descr +++ b/science/sigrok-firmware-fx2lafw/pkg-descr @@ -4,5 +4,3 @@ various device types, such as logic analyzers, MSOs, oscilloscopes, multimeters, LCR meters, sound level meters, thermometers, hygrometers, anemometers, light meters, DAQs, dataloggers, function generators, spectrum analyzers, power supplies, GPIB interfaces, and more. - -WWW: http://www.sigrok.org/wiki/Fx2lafw diff --git a/science/sigrok-firmware-utils/pkg-descr b/science/sigrok-firmware-utils/pkg-descr index dcee66b9525d..2befe6d85b5b 100644 --- a/science/sigrok-firmware-utils/pkg-descr +++ b/science/sigrok-firmware-utils/pkg-descr @@ -4,5 +4,3 @@ various device types, such as logic analyzers, MSOs, oscilloscopes, multimeters, LCR meters, sound level meters, thermometers, hygrometers, anemometers, light meters, DAQs, dataloggers, function generators, spectrum analyzers, power supplies, GPIB interfaces, and more. - -WWW: http://www.sigrok.org/wiki/Firmware diff --git a/science/sigrok-firmware/pkg-descr b/science/sigrok-firmware/pkg-descr index 287e10539d54..55a3f8292d9c 100644 --- a/science/sigrok-firmware/pkg-descr +++ b/science/sigrok-firmware/pkg-descr @@ -3,5 +3,3 @@ devices libsigrok supports (logic analyzers, oscilloscopes, or others). We only carry firmware files for which we have an explicit permission/license that allows at _least_ redistribution of the firmware. - -WWW: http://www.sigrok.org/wiki/Firmware diff --git a/science/silo/pkg-descr b/science/silo/pkg-descr index f31a1c06b2d6..600d871bda40 100644 --- a/science/silo/pkg-descr +++ b/science/silo/pkg-descr @@ -4,5 +4,3 @@ them can be easily shared and exchanged between wholly independently developed applications running on disparate computing platforms. Consequently, Silo facilitates the development of general purpose tools for processing scientific data. - -WWW: https://wci.llnl.gov/simulation/computer-codes/silo diff --git a/science/simbody/pkg-descr b/science/simbody/pkg-descr index 42180d7f6300..60ec4ee29d57 100644 --- a/science/simbody/pkg-descr +++ b/science/simbody/pkg-descr @@ -2,5 +2,3 @@ Simbody is useful for internal coordinate and coarse grained molecule modeling, large scale mechanical models like skeletons, and anything else that can be modeled as bodies interconnected by joints, acted upon by forces, and restricted by constraints. - -WWW: https://simtk.org/projects/simbody diff --git a/science/simgrid/pkg-descr b/science/simgrid/pkg-descr index 94aba29c3501..bf8bcdbfc04b 100644 --- a/science/simgrid/pkg-descr +++ b/science/simgrid/pkg-descr @@ -2,5 +2,3 @@ SimGrid is a scientific instrument to study the behavior of large-scale distributed systems such as Grids, Clouds, HPC or P2P systems. It can be used to evaluate heuristics, prototype applications or even assess legacy MPI applications. All this as a free software. - -WWW: https://simgrid.org/ diff --git a/science/simint/pkg-descr b/science/simint/pkg-descr index 820e5fc685f4..8ae997694e03 100644 --- a/science/simint/pkg-descr +++ b/science/simint/pkg-descr @@ -4,5 +4,3 @@ the primitive loop of the OS algorithm, with additional vectorization and optimizations left to the compiler. Simint is intended to be used for quantum chemistry computations. - -WWW: http://www.bennyp.org/research/simint/ diff --git a/science/simlib/pkg-descr b/science/simlib/pkg-descr index c15cb94c1cfb..be6372f4497f 100644 --- a/science/simlib/pkg-descr +++ b/science/simlib/pkg-descr @@ -7,5 +7,3 @@ continuous, discrete, combined, 2D/3D vector, and fuzzy models. SIMLIB/C++ is developed at the Department of Computer Science and Engineering, Faculty of Electrical Engineering and Computer Science, Brno University of Technology since 1991. - -WWW: http://www.fit.vutbr.cz/~peringer/SIMLIB/index.html.en diff --git a/science/simple-dftd3/pkg-descr b/science/simple-dftd3/pkg-descr index c875293996de..a5ab17e4918a 100644 --- a/science/simple-dftd3/pkg-descr +++ b/science/simple-dftd3/pkg-descr @@ -2,5 +2,3 @@ A simple drop-in replacement for dftd3. This program provides a small and easy to use implementation of the DFT-D3 dispersion correction. - -WWW: https://github.com/awvwgk/simple-dftd3 diff --git a/science/simsmith/pkg-descr b/science/simsmith/pkg-descr index 4db01b835f55..c3aa79f8b569 100644 --- a/science/simsmith/pkg-descr +++ b/science/simsmith/pkg-descr @@ -9,5 +9,3 @@ load parameters directly from the following: - CocoaNEC - Rig Expert ".aaplot" files - Touchstone S1P ".s1p" files (shunt and series) - -WWW: http://ae6ty.com/Smith_Charts.html diff --git a/science/sirius/pkg-descr b/science/sirius/pkg-descr index 5a3468ee0c9f..422b6c91fa51 100644 --- a/science/sirius/pkg-descr +++ b/science/sirius/pkg-descr @@ -5,5 +5,3 @@ popular community codes such as Exciting, Elk and Quantum ESPRESSO. SIRIUS is written in C++14 with MPI, OpenMP and CUDA/ROCm programming models. SIRIUS is organised as a collection of classes that abstract away the different building blocks of DFT self-consistency cycle. - -WWW: https://github.com/electronic-structure/SIRIUS diff --git a/science/smoldyn/pkg-descr b/science/smoldyn/pkg-descr index 427a23c68a02..0c1d1a591051 100644 --- a/science/smoldyn/pkg-descr +++ b/science/smoldyn/pkg-descr @@ -11,5 +11,3 @@ other particle-based simulators. Smoldyn's unique features include: a "virtual experimenter" who can manipulate or measure the simulated system, support for spatial compartments, molecules with excluded volume, and simulations in 1, 2, or 3 dimensions. - -WWW: https://www.smoldyn.org/ diff --git a/science/sparta/pkg-descr b/science/sparta/pkg-descr index 1931d10d6052..33546117b60a 100644 --- a/science/sparta/pkg-descr +++ b/science/sparta/pkg-descr @@ -11,5 +11,3 @@ easy to modify or extend with new functionality. SPARTA was developed at Sandia National Laboratories, a US Department of Energy (DOE) laboratory. - -WWW: https://sparta.sandia.gov/ diff --git a/science/spglib/pkg-descr b/science/spglib/pkg-descr index 1530522174f1..ed50913adff3 100644 --- a/science/spglib/pkg-descr +++ b/science/spglib/pkg-descr @@ -7,5 +7,3 @@ Features: * Refine crystal structure * Find a primitive cell * Search irreducible k-points - -WWW: https://spglib.github.io/spglib/ diff --git a/science/step/pkg-descr b/science/step/pkg-descr index af664ea528f4..571c25218bf6 100644 --- a/science/step/pkg-descr +++ b/science/step/pkg-descr @@ -5,5 +5,3 @@ evolve according to the laws of physics. You can change every property of bodies/forces in your experiment (even during simulation) and see how this will change the outcome of the experiment. With Step you can not only learn but feel how physics works! - -WWW: http://edu.kde.org/step diff --git a/science/svmlight/pkg-descr b/science/svmlight/pkg-descr index 8f73662107aa..7aeca2e7acde 100644 --- a/science/svmlight/pkg-descr +++ b/science/svmlight/pkg-descr @@ -14,5 +14,3 @@ computational expense, but they are conservatively biased. Almost unbiased estimates provides leave-one-out testing. SVMlight exploits that the results of most leave-one-outs (often more than 99%) are predetermined and need not be computed [Joachims, 2002a]. - -WWW: http://svmlight.joachims.org/ diff --git a/science/tblite/pkg-descr b/science/tblite/pkg-descr index 3b9bad676375..c54cae4b7d40 100644 --- a/science/tblite/pkg-descr +++ b/science/tblite/pkg-descr @@ -2,5 +2,3 @@ This project is an effort to create a library implementation of the extended tight binding (xTB) Hamiltonian which can be shared between xtb and dftb+. The current state of this project should be considered as highly experimental. - -WWW: https://github.com/tblite/tblite diff --git a/science/teem/pkg-descr b/science/teem/pkg-descr index 47458ba27625..a98e987f03f1 100644 --- a/science/teem/pkg-descr +++ b/science/teem/pkg-descr @@ -2,5 +2,3 @@ Teem is a set of ANSI C libraries for manipulation, measurement, and visualization of structured scientific data. Includes N-dimensional image I/O and processing, volume rendering, diffusion tensor processing, ray tracing, PostScript rendering, and more. - -WWW: http://teem.sourceforge.net/ diff --git a/science/tfel-edf/pkg-descr b/science/tfel-edf/pkg-descr index 7ef8993b1b49..62e734ac0d5e 100644 --- a/science/tfel-edf/pkg-descr +++ b/science/tfel-edf/pkg-descr @@ -20,5 +20,3 @@ test the local behaviour of a material, by imposing independent constraints on each component of the strain or the stress. This tool has been much faster (from ten to several hundred times depending on the test case) than using a full-fledged finite element solver. - -WWW: http://tfel.sourceforge.net/ diff --git a/science/tfel/pkg-descr b/science/tfel/pkg-descr index 25b8f2db1ca4..f6d76fb44cb6 100644 --- a/science/tfel/pkg-descr +++ b/science/tfel/pkg-descr @@ -20,5 +20,4 @@ constraints on each component of the strain or the stress. This tool has been much faster (from ten to several hundred times depending on the test case) than using a full-fledged finite element solver. -WWW: http://tfel.sourceforge.net/ -WWW: https://github.com/thelfer/tfel +See also: http://tfel.sourceforge.net/ diff --git a/science/thermofun/pkg-descr b/science/thermofun/pkg-descr index b9ea483f2589..2ecc495e54fe 100644 --- a/science/thermofun/pkg-descr +++ b/science/thermofun/pkg-descr @@ -1,4 +1,2 @@ A code for calculating the standard state thermodynamic properties at a given temperature and pressure. - -WWW: https://github.com/thermohub/thermofun diff --git a/science/tinker/pkg-descr b/science/tinker/pkg-descr index 0f2cc29dedd0..bd18a27c4744 100644 --- a/science/tinker/pkg-descr +++ b/science/tinker/pkg-descr @@ -12,5 +12,3 @@ located in the tinker/source directory and recompile. Note that if it is set too large that tinker programs will abort and core dump. For more information about Tinker see: - -WWW: https://dasher.wustl.edu/tinker/ diff --git a/science/trilinos/pkg-descr b/science/trilinos/pkg-descr index 713b21dd0510..a1ba28328733 100644 --- a/science/trilinos/pkg-descr +++ b/science/trilinos/pkg-descr @@ -3,5 +3,3 @@ technologies within an object-oriented software framework for the solution of large-scale, complex multi-physics engineering and scientific problems. A unique design feature of Trilinos is its focus on packages. - -WWW: https://trilinos.github.io/ diff --git a/science/tweedledum/pkg-descr b/science/tweedledum/pkg-descr index 9a92e5f057f8..53dca0c39bfe 100644 --- a/science/tweedledum/pkg-descr +++ b/science/tweedledum/pkg-descr @@ -2,5 +2,3 @@ tweedledum is a library for synthesis, compilation, and optimization of quantum circuits. The library is written to be scalable up to problem sizes in which quantum circuits outperform classical ones. Also, it is meant to be used both independently and alongside established tools. - -WWW: https://github.com/boschmitt/tweedledum diff --git a/science/udunits/pkg-descr b/science/udunits/pkg-descr index 21eedabb3624..44df70b862f2 100644 --- a/science/udunits/pkg-descr +++ b/science/udunits/pkg-descr @@ -3,5 +3,4 @@ between formatted and binary forms, arithmetic manipulation of unit specifications, and conversion of values between compatible scales of measurement. -WWW: https://www.unidata.ucar.edu/software/udunits/ -WWW: https://github.com/Unidata/UDUNITS-2 +See also: https://github.com/Unidata/UDUNITS-2 diff --git a/science/ukrmol+/pkg-descr b/science/ukrmol+/pkg-descr index 6a5946ec95a2..5945fa7602e7 100644 --- a/science/ukrmol+/pkg-descr +++ b/science/ukrmol+/pkg-descr @@ -2,5 +2,3 @@ Outer region programs for the re-engineered UK computational implementation of the R-matrix method for the treatment of electron and positron scattering from molecules (BTO/GTO continuum). Also calculates photoionization cross sections. - -WWW: https://zenodo.org/record/5799134#.Yo1lCknMKV4 diff --git a/science/v_sim/pkg-descr b/science/v_sim/pkg-descr index 31f9dd83626f..c578f0e08d3f 100644 --- a/science/v_sim/pkg-descr +++ b/science/v_sim/pkg-descr @@ -5,5 +5,3 @@ sphere to represent the atoms. The user can interact through many functions to choose the view, the size of the atoms, their color, the background color, the type of fog... Much of it is detailled in the user guide. Moreover V_Sim allows to export the view as image in GIF, PS or more formats. - -WWW: https://gitlab.com/l_sim/v_sim diff --git a/science/vipster/pkg-descr b/science/vipster/pkg-descr index db05a0588fc7..71733642d913 100644 --- a/science/vipster/pkg-descr +++ b/science/vipster/pkg-descr @@ -1,4 +1,2 @@ vipster is a visualization and editing framework for atomistic simulations. It allows to visualize various molecular structure files. - -WWW: https://sgsaenger.github.io/vipster/ diff --git a/science/vmd/pkg-descr b/science/vmd/pkg-descr index 54a79a601807..82404ecc97d5 100644 --- a/science/vmd/pkg-descr +++ b/science/vmd/pkg-descr @@ -1,4 +1,2 @@ VMD is a molecular visualization program for displaying, animating, and analyzing large biomolecular systems using 3-D graphics and built-in scripting. - -WWW: http://www.ks.uiuc.edu/Research/vmd/ diff --git a/science/voro++/pkg-descr b/science/voro++/pkg-descr index 65e2d5c0b3b5..836864f75554 100644 --- a/science/voro++/pkg-descr +++ b/science/voro++/pkg-descr @@ -5,5 +5,3 @@ each particle individually. It is particularly well-suited for applications that rely on cell-based statistics, where features of Voronoi cells (eg. volume, centroid, number of faces) can be used to analyze a system of particles. - -WWW: http://math.lbl.gov/voro++/ diff --git a/science/votca/pkg-descr b/science/votca/pkg-descr index 7e13db7a69af..290cf319f6e9 100644 --- a/science/votca/pkg-descr +++ b/science/votca/pkg-descr @@ -3,5 +3,3 @@ The Votca package contains two libraries: from atomistic simulation data * VOTCA-XTP, a library designed to determine electronic properties of organic materials from atomistic MD-trajectories. - -WWW: https://github.com/votca/votca diff --git a/science/wannier90/pkg-descr b/science/wannier90/pkg-descr index a8326715a616..b1bce64c43cd 100644 --- a/science/wannier90/pkg-descr +++ b/science/wannier90/pkg-descr @@ -1,4 +1,2 @@ The computer program that calculates maximally-localized Wannier functions (MLWFs) and Wannier90 for quantum chemistry and physics fields. - -WWW: http://www.wannier.org/ diff --git a/science/wwplot/pkg-descr b/science/wwplot/pkg-descr index 515f8509d321..7beb66481682 100644 --- a/science/wwplot/pkg-descr +++ b/science/wwplot/pkg-descr @@ -4,5 +4,3 @@ Features: * XY plot with error bars * Linear and nonlinear fit * Import and export table in TSV format (tab separated values) - -WWW: https://github.com/wwmm/wwplot diff --git a/science/wxmacmolplt/pkg-descr b/science/wxmacmolplt/pkg-descr index 5e0d5094f25d..3513bc625219 100644 --- a/science/wxmacmolplt/pkg-descr +++ b/science/wxmacmolplt/pkg-descr @@ -6,5 +6,3 @@ modes, orbitals and other properties. MacMolPlt is designed to be easy to use by the novice chemist yet has many powerful features that will be immediately indespensible to the advanced user. - -WWW: https://brettbode.github.io/wxmacmolplt/ diff --git a/science/xcfun/pkg-descr b/science/xcfun/pkg-descr index 7463ff10b434..435b73c6bc89 100644 --- a/science/xcfun/pkg-descr +++ b/science/xcfun/pkg-descr @@ -3,5 +3,3 @@ density-functional theory (DFT) codes. XCFun follows a unique implementation strategy which enables the computation of derivatives of the XC functional kernel up to arbitrary order. It does so by relying on forward-mode automatic differentiation. - -WWW: https://xcfun.readthedocs.io/en/latest/ diff --git a/science/xcrysden/pkg-descr b/science/xcrysden/pkg-descr index 8b7c2967b391..8b78b34a6823 100644 --- a/science/xcrysden/pkg-descr +++ b/science/xcrysden/pkg-descr @@ -1,5 +1,3 @@ XCrySDen is a crystalline and molecular structure visualisation program aiming at display of isosurfaces and contours, which can be superimposed on crystalline structures and interactively rotated and manipulated. - -WWW: http://www.xcrysden.org/ diff --git a/science/xdrawchem/pkg-descr b/science/xdrawchem/pkg-descr index 09f28b16de95..aa2feb0cef98 100644 --- a/science/xdrawchem/pkg-descr +++ b/science/xdrawchem/pkg-descr @@ -4,5 +4,3 @@ acids. It can read and write MDL Molfiles, read and write CML (Chemical Markup Language), read (some?) ChemDraw XML and binary files, and export to EPS. It can predict 13C NMR and simple IR spectra. It works under Unix or Windows. - -WWW: https://www.woodsidelabs.com/chemistry/xdrawchem.php diff --git a/science/xtb/pkg-descr b/science/xtb/pkg-descr index db137e1f6983..cbda1c5003d5 100644 --- a/science/xtb/pkg-descr +++ b/science/xtb/pkg-descr @@ -2,5 +2,3 @@ Semiempirical Extended Tight-Binding Program Package xtb implements a variety of semiempirical, tight-binding, and force field methods for computational chemistry and materials science. - -WWW: https://github.com/grimme-lab/xtb diff --git a/science/yoda/pkg-descr b/science/yoda/pkg-descr index c26e23bc9f91..9aa39ebe8595 100644 --- a/science/yoda/pkg-descr +++ b/science/yoda/pkg-descr @@ -1,5 +1,3 @@ YODA is a small set of data analysis (specifically histogramming) classes being developed by MCnet members as a lightweight common system for MC event generator validation analyses, particularly as the core histogramming system in Rivet. - -WWW: https://yoda.hepforge.org/ diff --git a/science/zotero/pkg-descr b/science/zotero/pkg-descr index 3394067edb80..ccb6cd37f9ac 100644 --- a/science/zotero/pkg-descr +++ b/science/zotero/pkg-descr @@ -1,4 +1,2 @@ Zotero is a reference management software to manage bibliographic data and related research materials. - -WWW: https://www.zotero.org/ |