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-rw-r--r--biology/povchem/files/patch-povchem.c185
1 files changed, 0 insertions, 185 deletions
diff --git a/biology/povchem/files/patch-povchem.c b/biology/povchem/files/patch-povchem.c
deleted file mode 100644
index 060fb8a056c3..000000000000
--- a/biology/povchem/files/patch-povchem.c
+++ /dev/null
@@ -1,185 +0,0 @@
---- povchem.c.orig Fri Jul 11 11:49:07 2003
-+++ povchem.c Fri Jul 11 11:59:23 2003
-@@ -482,7 +482,7 @@
- */
-
- if (*fileName==NULL) {
-- New_String(fileName,"povchem.cfg");
-+ New_String(fileName,SYSCONFDIR "/povchem.cfg");
- if ((config=fopen(*fileName,"r"))==NULL) {
- puts("Can't read the configuration file \"povchem.cfg\"!");
- perror("Reason");
-@@ -731,7 +731,7 @@
-
- no_config:
-
-- if (!PERIODIC_TABLE_FILE) New_String(&PERIODIC_TABLE_FILE,"periodic.tab");
-+ if (!PERIODIC_TABLE_FILE) New_String(&PERIODIC_TABLE_FILE,DATADIR "/periodic.tab");
- if (!FINISH) New_String(&FINISH,"Plastic");
- if (!FINISH_DECLARATION) New_String(&FINISH_DECLARATION,"\
- finish {\n\
-@@ -742,7 +742,7 @@
- phong 0.3\n\
- phong_size 50\n\
- specular 0.0\n\
-- }\n\n");
-+ };\n\n");
-
- if (POVRAY && (!POV_OPTIONS || !POV_WIDTH) ) {
- puts("Warning: to run POV-Ray from PovChem, you must define *all* the");
-@@ -977,10 +977,10 @@
- if (model==CPK ||
- (model==BALLnSTICK && ballSizeModel==PROPORTIONAL) ) {
- if (model==BALLnSTICK)
-- fprintf(pov,"#declare Proportionality_Constant = %.*g\n",SF,ballRadius);
-+ fprintf(pov,"#declare Proportionality_Constant = %.*g;\n",SF,ballRadius);
- for (Z=0;Z<NUM_ELEMENTS;Z++) {
- if (PeriodicTable[Z].isPresent) {
-- fprintf(pov,"#declare %s_Radius = %.*g",
-+ fprintf(pov,"#declare %s_Radius = %.*g;",
- PeriodicTable[Z].name,SF,PeriodicTable[Z].vdW);
- if (model==BALLnSTICK)
- fputs("*Proportionality_Constant\n",pov);
-@@ -989,13 +989,13 @@
- }
- }
- } else
-- fprintf(pov,"#declare All_Atom_Radius = %.*g\n",SF,Determine_Radius(0));
-+ fprintf(pov,"#declare All_Atom_Radius = %.*g;\n",SF,Determine_Radius(0));
- fputs("\n",pov);
-
- if (sphereColorModel==BY_ELEMENT || cylinderColorModel==BY_ELEMENT) {
- for (Z=0;Z<NUM_ELEMENTS;Z++) {
- if (PeriodicTable[Z].isPresent) {
-- fprintf(pov,"#declare Atom_%s_Color = color rgb <%.5g, %.5g, %.5g>\n",
-+ fprintf(pov,"#declare Atom_%s_Color = color rgb <%.5g, %.5g, %.5g>;\n",
- PeriodicTable[Z].name,RED(Z),GREEN(Z),BLUE(Z));
- }
- }
-@@ -1003,20 +1003,20 @@
- }
-
- if (sphereColorModel==ALL_THE_SAME)
-- fprintf(pov,"#declare All_Atom_Color = color rgb <%.5g, %.5g, %.5g>\n\n",
-+ fprintf(pov,"#declare All_Atom_Color = color rgb <%.5g, %.5g, %.5g>;\n\n",
- allSphereColor.r,allSphereColor.g,allSphereColor.b);
-
- if (sphereColorModel==BY_PDB) {
- if (ballSizeModel==CONSTANT) {
- fputs("#declare Atom_All =\n sphere {\n",pov);
- fputs(" <0,0,0>, All_Atom_Radius\n",pov);
-- fprintf(pov," finish { %s }\n }\n\n",FINISH);
-+ fprintf(pov," finish { %s }\n };\n\n",FINISH);
- } else {
- for (Z=0;Z<NUM_ELEMENTS;Z++) {
- if (PeriodicTable[Z].isPresent) {
- fprintf(pov,"#declare Atom_%s =\n sphere {\n",PeriodicTable[Z].name);
- fprintf(pov," <0,0,0>, %s_Radius\n",PeriodicTable[Z].name);
-- fprintf(pov," finish { %s }\n }\n",FINISH);
-+ fprintf(pov," finish { %s }\n };\n",FINISH);
- }
- }
- fputs("\n",pov);
-@@ -1024,7 +1024,7 @@
- tag=firstSphereTag;
- nTags=nSphereTags;
- for (i=0;i<nTags;i++) {
-- fprintf(pov,"#declare Atom_%s_Color = color rgb <%.5g, %.5g, %.5g>\n",
-+ fprintf(pov,"#declare Atom_%s_Color = color rgb <%.5g, %.5g, %.5g>;\n",
- tag->name,tag->r,tag->g,tag->b);
- tag=tag->next;
- }
-@@ -1051,7 +1051,7 @@
- fputs( " pigment { color All_Atom_Color }\n",pov);
- break;
- }
-- fprintf(pov," finish { %s }\n }\n }\n",FINISH);
-+ fprintf(pov," finish { %s }\n }\n };\n",FINISH);
- }
- }
-
-@@ -1060,7 +1060,7 @@
- fputs( " <0,0,0>, All_Atom_Radius\n",pov);
- fputs( " texture {\n",pov);
- fputs( " pigment { color All_Atom_Color }\n",pov);
-- fprintf(pov," finish { %s }\n }\n }\n",FINISH);
-+ fprintf(pov," finish { %s }\n }\n };\n",FINISH);
- }
-
- fputs("\n",pov);
-@@ -1080,26 +1080,26 @@
- factors[4]=HIGH_ORDER_FACTOR;
-
- if (nOrders[H_BOND]) {
-- fprintf(pov,"#declare H_Bond_Radius = %.*g\n",SF,HBondRadius);
-- fprintf(pov,"#declare H_Bond_Color = color rgb <%.5g, %.5g, %.5g>\n",
-+ fprintf(pov,"#declare H_Bond_Radius = %.*g;\n",SF,HBondRadius);
-+ fprintf(pov,"#declare H_Bond_Color = color rgb <%.5g, %.5g, %.5g>;\n",
- HBondColor.r,HBondColor.g,HBondColor.b);
- fputs( "#declare H_Bond =\n cylinder {\n",pov);
- fputs( " <0,0,0>, <1,0,0>, H_Bond_Radius\n",pov);
- fputs( " texture {\n",pov);
- fputs( " pigment { H_Bond_Color }\n",pov);
-- fprintf(pov," finish { %s }\n }\n }\n\n",FINISH);
-+ fprintf(pov," finish { %s }\n }\n };\n\n",FINISH);
- }
-
- if (model==CYLINDER)
-- fputs("#declare All_Bond_Radius = All_Atom_Radius\n\n",pov);
-+ fputs("#declare All_Bond_Radius = All_Atom_Radius;\n\n",pov);
- else {
- if (cylinderSizeModel==CONSTANT)
-- fprintf(pov,"#declare All_Bond_Radius = %.*g\n\n",SF,cylinderRadius);
-+ fprintf(pov,"#declare All_Bond_Radius = %.*g;\n\n",SF,cylinderRadius);
- else {
-- fprintf(pov,"#declare Single_Bond_Radius = %.*g\n",SF,cylinderRadius);
-+ fprintf(pov,"#declare Single_Bond_Radius = %.*g;\n",SF,cylinderRadius);
- for (i=DOUBLE;i<=HIGH_ORDER;i++) {
- if (nOrders[i])
-- fprintf(pov,"#declare %sBond_Radius = Single_Bond_Radius*%.*g\n",
-+ fprintf(pov,"#declare %sBond_Radius = Single_Bond_Radius*%.*g;\n",
- orderTypes[i],SF,factors[i]);
- }
- fputs("\n",pov);
-@@ -1107,7 +1107,7 @@
- }
-
- if (cylinderColorModel==ALL_THE_SAME)
-- fprintf(pov,"#declare All_Bond_Color = color rgb <%.5g, %.5g, %.5g>\n\n",
-+ fprintf(pov,"#declare All_Bond_Color = color rgb <%.5g, %.5g, %.5g>;\n\n",
- allCylinderColor.r,allCylinderColor.g,allCylinderColor.b);
-
- fputs( "#declare Bond =\n cylinder {\n",pov);
-@@ -1124,12 +1124,12 @@
- } else
- fprintf(pov," finish { %s }\n",FINISH);
-
-- fputs( " }\n\n",pov);
-+ fputs( " };\n\n",pov);
-
- if (cylinderColorModel==BY_PDB && firstCylinderTag!=firstSphereTag) {
- tag=firstCylinderTag;
- for (i=0;i<nCylinderTags;i++) {
-- fprintf(pov,"#declare Bond_%s_Color = color rgb <%.5g, %.5g, %.5g>\n",
-+ fprintf(pov,"#declare Bond_%s_Color = color rgb <%.5g, %.5g, %.5g>;\n",
- tag->name,tag->r,tag->g,tag->b);
- tag=tag->next;
- }
-@@ -2092,7 +2092,7 @@
- * the origin, looking along +Z, sky along +Y.
- */
-
-- fprintf(pov,"#declare Camera_Position = < %.6g, %.6g, %.6g >\n\n",
-+ fprintf(pov,"#declare Camera_Position = < %.6g, %.6g, %.6g >;\n\n",
- eye.x,eye.y,eye.z);
-
- fputs( "camera{\n",pov);
-@@ -2317,7 +2317,7 @@
-
- /*-------------------- the main program body --------------------------*/
-
--void main(int argc, char *argv[])
-+int main(int argc, char *argv[])
- {
- char *pdbName, *configName=NULL;
- char *tgaName=NULL, *leftTga=NULL, *rightTga=NULL;